Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Forward (+)

12422036 .. 12426475

Gene Structure 4440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23895.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATGATGGTACTCCTAAGAAGCTAAACATATTACCTGATCACTTTAGTGCTCCTAGTCCCACAGCAGAATCTTCTCAGCACGATACTCCATCATCTTCGCAGCCAAAGGACGATAGTTCTCTGAGGCCTTATAGCCAGTCACGGACTCGCAGAAACCTGAAAAGAGCAGCAACTATGTTGAATTTGTTCACTCTTCGCCGTCTGCCTTGGGTTTCAGATGGTCAAGAGAAGGTCGAGCTATCAGCAGCGGAGTTAGAATCACTTAGATCAGAACTTTCTGATATGGAAGAAAGAGAAGCTTACCTCAAAGCCCAGTTGGAACATGTGGATGAAGTCTTGCGCTCTGCCCGTTTATCTGGTTATTTGTTTATCAGAAGTCGTTGGGCAGCTCTTCCGGGTGAACCACCACCAATAGATGATACAGAAGTAGACGACTGGCTTCCTCGGTTTGTCGTCCTTCAAGGCCCTTGTCTTTTCTTCTATTTATTGTCAACAGACTTGAGCCCTCAAGATTCGACATTGCTAGCAGATATTGTTGAAATTGGTTCGGTACCAAGCTACACGAGAGAATTCGATGAAACCCATTATTGCTTTTACATATTAACCCGTCAAGGTCTAAGATTTGAGTGCTCAAGCACCTCTAAAACACAGGTTGATTCGTGGTTGTCGGTTTTGCGCCTTGATTGCAAGTCTGAACCAGAAGAAAGGTTATCAAATGGATCAGTCGAAGCTCCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

247

Amino Acids

28.03

Weight (kDa)

4.79

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	318 - 451	1.3e-53	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	184, 572
AfaI	GTAC	2 cut(s)	13, 555
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	184, 464, 542
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	6 cut(s)	25, 241, 302, 392, 561, 734
AluI	AGCT	6 cut(s)	25, 241, 302, 392, 561, 734
Alw21I	GWGCWC	2 cut(s)	55, 635
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	2 cut(s)	128, 466
ApeKI	GCWGC	4 cut(s)	103, 170, 248, 389
ApoI	RAATTY	2 cut(s)	184, 572
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	553
AspLEI	GCGC	2 cut(s)	345, 681
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanI	GGYRCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	565
Bbv12I	GWGCWC	2 cut(s)	55, 635
BbvI	GCAGC	4 cut(s)	115, 182, 260, 401
BccI	CCATC	3 cut(s)	2, 100, 215
BceAI	ACGGC	1 cut(s)	186
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	399
BfaI	CTAG	2 cut(s)	57, 527
BisI	GCNGC	4 cut(s)	104, 171, 249, 390
BlsI	GCNGC	4 cut(s)	105, 172, 250, 391
Bme1390I	CCNGG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	310
BmtI	GCTAGC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	3 cut(s)	495, 523, 619
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	209, 446
Bse1I	ACTGG	3 cut(s)	139, 316, 443
Bse3DI	GCAATG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	209, 446
BseGI	GGATG	2 cut(s)	10, 337
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	92, 116
BseNI	ACTGG	3 cut(s)	139, 316, 443
BseXI	GCAGC	4 cut(s)	115, 182, 260, 401
BshFI	GGCC	2 cut(s)	130, 468
BshNI	GGYRCC	1 cut(s)	553
BsiHKAI	GWGCWC	2 cut(s)	55, 635
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	130, 468
Bsp1286I	GDGCHC	3 cut(s)	55, 509, 635
Bsp143I	GATC	3 cut(s)	40, 269, 722
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	130, 468
BspCNI	CTCAG	2 cut(s)	91, 117
BspLI	GGNNCC	1 cut(s)	555
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	139, 316, 443
BssECI	CCNNGG	2 cut(s)	209, 446
BssMI	GATC	3 cut(s)	40, 269, 722
BssSI	CACGAG	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	201, 399
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	5 cut(s)	18, 78, 125, 266, 620
BstF5I	GGATG	2 cut(s)	10, 337
BstHHI	GCGC	2 cut(s)	345, 681
BstKTI	GATC	3 cut(s)	43, 272, 725
BstMBI	GATC	3 cut(s)	40, 269, 722
BstMWI	GCNNNNNNNGC	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	4 cut(s)	115, 182, 260, 401
BsuRI	GGCC	2 cut(s)	130, 468
BtsCI	GGATG	2 cut(s)	10, 337
Cac8I	GCNNGC	1 cut(s)	528
CfoI	GCGC	2 cut(s)	345, 681
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	12, 554
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	2 cut(s)	12, 554
DdeI	CTNAG	5 cut(s)	18, 78, 125, 266, 620
DpnI	GATC	3 cut(s)	42, 271, 724
DpnII	GATC	3 cut(s)	40, 269, 722
Eam1104I	CTCTTC	2 cut(s)	201, 399
EarI	CTCTTC	2 cut(s)	201, 399
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	329
FaiI	YATR	6 cut(s)	32, 135, 179, 287, 327, 602
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	104, 171, 249, 390
FokI	GGATG	2 cut(s)	17, 344
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	4 cut(s)	104, 171, 249, 390
FspBI	CTAG	2 cut(s)	57, 527
GlaI	GCGC	2 cut(s)	344, 680
GluI	GCNGC	4 cut(s)	104, 171, 249, 390
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	130, 468
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	2 cut(s)	345, 681
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	343, 679
HinP1I	GCGC	2 cut(s)	343, 679
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	5 cut(s)	71, 148, 260, 515, 659
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	192, 404, 433, 495
Hpy188I	TCNGA	6 cut(s)	126, 220, 274, 283, 377, 697
Hpy188III	TCNNGA	3 cut(s)	227, 512, 737
Hpy8I	GTNNAC	4 cut(s)	192, 404, 433, 495
HpyAV	CCTTC	2 cut(s)	226, 470
HpyCH4V	TGCA	1 cut(s)	690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	687
HpyF3I	CTNAG	5 cut(s)	18, 78, 125, 266, 620
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	343, 679
KpnI	GGTACC	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 269, 722
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	58, 739
LpnPI	CCDG	9 cut(s)	51, 152, 173, 329, 345, 411, 424, 638, 714
Lsp1109I	GCAGC	4 cut(s)	115, 182, 260, 401
MaeI	CTAG	2 cut(s)	57, 527
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	3 cut(s)	42, 271, 724
MboI	GATC	3 cut(s)	40, 269, 722
MboII	GAAGA	7 cut(s)	66, 90, 188, 302, 386, 472, 716
MhlI	GDGCHC	3 cut(s)	55, 509, 635
MluCI	AATT	3 cut(s)	184, 543, 572
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	120, 317, 456, 519, 652
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	48, 330
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	687
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	40, 269, 722
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	130
PciI	ACATGT	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	71, 260, 515, 659
PkrI	GCNGC	4 cut(s)	105, 172, 250, 391
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	467
RsaI	GTAC	2 cut(s)	13, 555
RsaNI	GTAC	2 cut(s)	12, 554
RseI	CAYNNNNRTG	2 cut(s)	48, 330
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	4 cut(s)	104, 171, 249, 390
Sau3AI	GATC	3 cut(s)	40, 269, 722
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	3 cut(s)	55, 509, 635
SmiMI	CAYNNNNRTG	2 cut(s)	48, 330
SmlI	CTYRAG	3 cut(s)	502, 510, 634
SmoI	CTYRAG	3 cut(s)	502, 510, 634
Sse9I	AATT	3 cut(s)	184, 543, 572
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	2 cut(s)	57, 527
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	209
TaqI	TCGA	4 cut(s)	237, 518, 576, 729
TasI	AATT	3 cut(s)	184, 543, 572
TfiI	GAWTC	4 cut(s)	71, 260, 515, 659
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	103, 170, 248, 389
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	348, 594
TspGWI	ACGGA	1 cut(s)	160
XapI	RAATTY	2 cut(s)	184, 572
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	57, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.