Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

10744875 .. 10747449

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAACAAGAGGACCCTCTCCATCAAGCTCGTGCCTTTCTGTAAAAACAAGTCTCTTTCTACTGGGTTGTTGAATTCATGTTTGCGCCTTATTCTAGAACTGAAAATCAGCTTCATGGATGATGGTCTTGGGAAGATAAAGGTTATTCCAGATCATTTTAAAGCATCCTCACCCAGTGTTGACTCTTCTCAAAATGATAGGTCCCATAGCTGGAGTCTAGGAAAATTAAGAACTGCTGCACACATGTTGAAGTCGTTTAGTCTAAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACACGTTGATGAGATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGATATGCATTTTATATTTTAACACGTCAAGGACTGCGGTATGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGTGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

268

Amino Acids

30.18

Weight (kDa)

5.35

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	551
AciI	CCGC	1 cut(s)	694
AcsI	RAATTY	2 cut(s)	73, 730
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	3 cut(s)	243, 397, 680
AgsI	TTSAA	5 cut(s)	73, 250, 382, 614, 730
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	2 cut(s)	469, 734
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 722, 754
AluBI	AGCT	8 cut(s)	28, 111, 210, 313, 349, 374, 386, 633
AluI	AGCT	8 cut(s)	28, 111, 210, 313, 349, 374, 386, 633
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	2 cut(s)	57, 431
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	73, 730
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	4 cut(s)	12, 201, 540, 620
AsuHPI	GGTGA	2 cut(s)	162, 308
AsuII	TTCGAA	2 cut(s)	340, 448
AvaII	GGWCC	4 cut(s)	12, 201, 540, 620
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BauI	CACGAG	2 cut(s)	29, 639
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	29, 116, 287
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	2 cut(s)	471, 736
BcoDI	GTCTC	2 cut(s)	57, 431
BfaI	CTAG	6 cut(s)	95, 218, 285, 329, 453, 708
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	471, 736
Bme18I	GGWCC	4 cut(s)	12, 201, 540, 620
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	4 cut(s)	12, 201, 540, 620
BmiI	GGNNCC	4 cut(s)	14, 203, 541, 622
BmrFI	CCNGG	2 cut(s)	471, 736
BmrI	ACTGGG	2 cut(s)	72, 168
BmsI	GCATC	2 cut(s)	173, 769
BmuI	ACTGGG	2 cut(s)	72, 168
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	2 cut(s)	340, 448
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	67, 174, 515
BseBI	CCWGG	2 cut(s)	471, 736
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	124, 164, 298
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	3 cut(s)	67, 174, 515
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	707
BslFI	GGGAC	3 cut(s)	187, 553, 606
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	57, 431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	3 cut(s)	187, 553, 606
Bsp119I	TTCGAA	2 cut(s)	340, 448
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	151, 571
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	1 cut(s)	694
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	4 cut(s)	14, 203, 541, 622
BspMI	ACCTGC	1 cut(s)	551
BspT104I	TTCGAA	2 cut(s)	340, 448
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	67, 174, 515
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	151, 571
BssSI	CACGAG	2 cut(s)	29, 639
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	2 cut(s)	29, 639
Bst2UI	CCWGG	2 cut(s)	471, 736
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	190, 357
BstAUI	TGTACA	1 cut(s)	441
BstBI	TTCGAA	2 cut(s)	340, 448
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	263, 575, 717
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	124, 164, 298
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	154, 574
BstMAI	GTCTC	2 cut(s)	57, 431
BstMBI	GATC	2 cut(s)	151, 571
BstNI	CCWGG	2 cut(s)	471, 736
BstNSI	RCATGY	2 cut(s)	247, 550
BstSCI	CCNGG	2 cut(s)	469, 734
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BtgI	CCRYGG	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	3 cut(s)	124, 164, 298
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	12, 201, 540, 620
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	6 cut(s)	78, 115, 244, 276, 547, 801
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	263, 575, 717
DpnI	GATC	2 cut(s)	153, 573
DpnII	GATC	2 cut(s)	151, 571
DraI	TTTAAA	1 cut(s)	160
DraIII	CACNNNGTG	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	190, 357
EarI	CTCTTC	2 cut(s)	190, 357
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	4 cut(s)	12, 201, 540, 620
EcoO109I	RGGNCCY	4 cut(s)	12, 201, 540, 620
EcoRI	GAATTC	2 cut(s)	73, 730
EcoRII	CCWGG	2 cut(s)	469, 734
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	6 cut(s)	81, 118, 247, 279, 550, 804
FaqI	GGGAC	3 cut(s)	187, 553, 606
FatI	CATG	6 cut(s)	77, 114, 243, 275, 546, 800
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	131, 151, 305
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	6 cut(s)	95, 218, 285, 329, 453, 708
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	81, 118, 247, 279, 550, 804
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	4 cut(s)	182, 214, 332, 587
HphI	GGTGA	2 cut(s)	162, 308
Hpy166II	GTNNAC	2 cut(s)	181, 459
Hpy188I	TCNGA	3 cut(s)	604, 718, 778
Hpy188III	TCNNGA	3 cut(s)	95, 149, 584
Hpy8I	GTNNAC	2 cut(s)	181, 459
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	2 cut(s)	399, 682
HpyCH4V	TGCA	5 cut(s)	239, 535, 546, 665, 762
HpyF3I	CTNAG	3 cut(s)	263, 575, 717
HpySE526I	ACGT	2 cut(s)	399, 682
Hsp92II	CATG	6 cut(s)	81, 118, 247, 279, 550, 804
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	151, 571
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	173, 769
MaeI	CTAG	6 cut(s)	95, 218, 285, 329, 453, 708
MaeII	ACGT	2 cut(s)	399, 682
MalI	GATC	2 cut(s)	153, 573
MboI	GATC	2 cut(s)	151, 571
MboII	GAAGA	5 cut(s)	145, 177, 311, 374, 544
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	5 cut(s)	73, 224, 389, 730, 764
MlyI	GAGTC	3 cut(s)	176, 223, 581
MnlI	CCTC	7 cut(s)	3, 26, 178, 360, 489, 492, 591
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	3 cut(s)	159, 227, 677
MslI	CAYNNNNRTG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	471, 736
MunI	CAATTG	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	471, 736
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	151, 571
NlaIII	CATG	6 cut(s)	81, 118, 247, 279, 550, 804
NlaIV	GGNNCC	4 cut(s)	14, 203, 541, 622
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	247, 550
NspV	TTCGAA	2 cut(s)	340, 448
PciI	ACATGT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	176, 222, 581
PpsI	GAGTC	3 cut(s)	176, 222, 581
PpuMI	RGGWCCY	4 cut(s)	12, 201, 540, 620
PscI	ACATGT	1 cut(s)	243
Psp5II	RGGWCCY	4 cut(s)	12, 201, 540, 620
Psp6I	CCWGG	2 cut(s)	469, 734
PspGI	CCWGG	2 cut(s)	469, 734
PspN4I	GGNNCC	4 cut(s)	14, 203, 541, 622
PspPI	GGNCC	4 cut(s)	12, 201, 540, 620
PspPPI	RGGWCCY	4 cut(s)	12, 201, 540, 620
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	159, 227, 677
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	151, 571
Sau96I	GGNCC	4 cut(s)	12, 201, 540, 620
SchI	GAGTC	3 cut(s)	176, 223, 581
ScrFI	CCNGG	2 cut(s)	471, 736
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	2 cut(s)	173, 769
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	2 cut(s)	340, 448
SinI	GGWCC	4 cut(s)	12, 201, 540, 620
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	5 cut(s)	73, 224, 389, 730, 764
SsiI	CCGC	1 cut(s)	694
SspMI	CTAG	6 cut(s)	95, 218, 285, 329, 453, 708
StyD4I	CCNGG	2 cut(s)	469, 734
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	2 cut(s)	402, 685
TaqI	TCGA	3 cut(s)	340, 448, 658
TasI	AATT	5 cut(s)	73, 224, 389, 730, 764
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	159, 227, 677
Tru9I	TTAA	3 cut(s)	159, 227, 677
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	17, 66, 103, 663
TspGWI	ACGGA	2 cut(s)	305, 359
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	4 cut(s)	12, 201, 540, 620
XapI	RAATTY	2 cut(s)	73, 730
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	2 cut(s)	247, 550
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	6 cut(s)	95, 218, 285, 329, 453, 708
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.