Rroxscaffold_3G00261110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001166
Physical Location & Seq
Forward (+)
55459666 .. 55464552
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261110.1

Sequence Viewer

Length: 1221 bp
ATGCAAAGGATGAAAGTTATGCCATTGAAAGTCGGTAAAAGAAATCAAGATATGATGATGGAAAACAGACTAGGTATAATGATGATAGGGGAAGTAGAGGTGATGATAGAGTGGACCATGACTATAGTACATCCCGAAGTACCAAGGAACGACATGTTGATCCAGAAAACAATAATGGAGGAGACACTGTGTATAATAATGACTGGAGAAATAGAGCTGATGATAGAGAGGACCAAGCCTATAGCAGATCCAGAAGTACCAAGGAACAACATGTTGATCCTGAAAAGAATGATAGAGGGTACACTAGGTATAAGGATGATAGGGGAAATAGAGCTGATGATAGAGAGGGCCAAAACTATAGCGGCCCGAAGTACCAAGGAACGACATGTTGATCCAGAAAAGAATGCTGGAGAATTCACTAGGTGTAATGATGATAGGGGAAATAGAGTTGATGATAGAAAGGACCGAAGCTATAGTAGATCCCGAAGTACCAAGGAACAACATTTTGATCCAGAAAAGAAAGTCAGTGGCATGGCAGAGCCTATTGCTGATAAGGAAGGGTCTCATTTACACCATGCTGATGCAGACTCAAATGCAAGCTGTAACAGACAGAGGAATTCACCTAGCTCCTATTATCATCTTTCAAAAGATCAATCCAGGCCCTCAGTCCAAGCAGAATTAAAGTATGGGGAACCTGAAGAAAGAGTGAGGCAAAATTTCCTTCCCTCAATGGAGGTTGTAGATGTTTCTGGAGTTCTTGAGCAGCCTTGTTTGTATAAGCTCACCAAGAGACTAATTGACAAGGATGACAGTAGTTTCGGTGACTTATCAGTTGAGAGGGATTTAATTTCTGATGAGTCCAAGCCCTCCACTTCTCCTCTGGATCTACCTGATAATTCTAAGTTGACAAGATCTACTGGGGAAAACTATGATAGCAAAACATATGGAAAGAGTAGTGGTGTCAAGGATACTGGTTCATCTTGTGCTGAAGGAAAGGGAAGTTGGCAGTTGCCTTCCAAGAAGCTTCCTACAGGTGGAAAATTCCAGGAAGATAGTGATGTTTTCTCTTCTTCATCTTCTATTAATGCTGGTCAAGTACCTACTCATACTCCAATTTTCATCGACCACACAATCATTACAAGAGGGCTAATCGTCCCAATGCTGGACCAGTGCATGGTAATGCCAGCTAAGGTGTTCCAAATCGGCCTTCTCCATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.73

Weight (kDa)

6.0

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1174
AciI CCGC 1 cut(s) 362
AclWI GGATC 7 cut(s) 154, 242, 271, 386, 474, 503, 891
AcsI RAATTY 4 cut(s) 413, 616, 715, 1040
AcuI CTGAAG 2 cut(s) 717, 1008
AdeI CACNNNGTG 1 cut(s) 423
AfaI GTAC 7 cut(s) 129, 141, 258, 301, 373, 490, 1098
AfiI CCNNNNNNNGG 3 cut(s) 1034, 1162, 1174
AflIII ACRYGT 3 cut(s) 153, 270, 385
AgsI TTSAA 2 cut(s) 28, 645
AjnI CCWGG 2 cut(s) 656, 1044
AjuI GAANNNNNNNTTGG 3 cut(s) 985, 1017, 1191
AluBI AGCT 8 cut(s) 217, 334, 471, 600, 627, 781, 1024, 1187
AluI AGCT 8 cut(s) 217, 334, 471, 600, 627, 781, 1024, 1187
Alw26I GTCTC 3 cut(s) 176, 567, 784
AlwI GGATC 7 cut(s) 154, 242, 271, 386, 474, 503, 891
AoxI GGCC 4 cut(s) 348, 363, 659, 1204
ApeKI GCWGC 1 cut(s) 763
ApoI RAATTY 4 cut(s) 413, 616, 715, 1040
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AseI ATTAAT 1 cut(s) 1083
AspS9I GGNCC 7 cut(s) 114, 231, 348, 364, 463, 660, 1165
AsuHPI GGTGA 4 cut(s) 112, 612, 775, 833
AvaII GGWCC 4 cut(s) 114, 231, 463, 1165
BbvI GCAGC 1 cut(s) 775
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 658, 1046
BciVI GTATCC 1 cut(s) 961
BcoDI GTCTC 3 cut(s) 176, 567, 784
BfaI CTAG 4 cut(s) 71, 305, 420, 624
BfmI CTRYAG 5 cut(s) 123, 240, 357, 472, 1029
BfuI GTATCC 1 cut(s) 961
BglII AGATCT 1 cut(s) 911
BisI GCNGC 2 cut(s) 363, 764
BlsI GCNGC 2 cut(s) 364, 765
Bme1390I CCNGG 2 cut(s) 658, 1046
Bme18I GGWCC 4 cut(s) 114, 231, 463, 1165
BmgT120I GGNCC 7 cut(s) 114, 231, 348, 364, 463, 660, 1165
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 2 cut(s) 658, 1046
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 1 cut(s) 571
BmuI ACTGGG 1 cut(s) 927
BpmI CTGGAG 3 cut(s) 225, 429, 771
Bpu10I CCTNAGC 1 cut(s) 1188
BpuEI CTTGAG 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 4 cut(s) 143, 260, 375, 492
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 1093, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 1034, 1162, 1174
Bse1I ACTGG 4 cut(s) 208, 922, 976, 1168
BseBI CCWGG 2 cut(s) 658, 1046
BseDI CCNNGG 4 cut(s) 143, 260, 375, 492
BseGI GGATG 4 cut(s) 15, 130, 321, 811
BseLI CCNNNNNNNGG 3 cut(s) 1034, 1162, 1174
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 4 cut(s) 208, 922, 976, 1168
BseRI GAGGAG 2 cut(s) 194, 867
BseXI GCAGC 1 cut(s) 775
BshFI GGCC 4 cut(s) 350, 365, 661, 1206
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 3 cut(s) 1034, 1162, 1174
BsmAI GTCTC 3 cut(s) 176, 567, 784
BsmFI GGGAC 1 cut(s) 1139
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 4 cut(s) 350, 365, 661, 1206
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
BspACI CCGC 1 cut(s) 362
BspANI GGCC 4 cut(s) 350, 365, 661, 1206
BspCNI CTCAG 1 cut(s) 677
BspLI GGNNCC 1 cut(s) 693
BspPI GGATC 7 cut(s) 154, 242, 271, 386, 474, 503, 891
BspTNI GGTCTC 1 cut(s) 567
BsrI ACTGG 4 cut(s) 208, 922, 976, 1168
BssECI CCNNGG 4 cut(s) 143, 260, 375, 492
BssMI GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
BssT1I CCWWGG 4 cut(s) 143, 260, 375, 492
Bst2UI CCWGG 2 cut(s) 658, 1046
Bst4CI ACNGT 2 cut(s) 189, 812
Bst6I CTCTTC 1 cut(s) 1072
BstC8I GCNNGC 2 cut(s) 598, 1185
BstDEI CTNAG 3 cut(s) 664, 900, 1188
BstF5I GGATG 4 cut(s) 15, 130, 321, 811
BstKTI GATC 9 cut(s) 162, 250, 279, 394, 482, 511, 652, 886, 914
BstMAI GTCTC 3 cut(s) 176, 567, 784
BstMBI GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
BstNI CCWGG 2 cut(s) 658, 1046
BstNSI RCATGY 3 cut(s) 157, 274, 389
BstSCI CCNGG 2 cut(s) 656, 1044
BstSFI CTRYAG 5 cut(s) 123, 240, 357, 472, 1029
BstV1I GCAGC 1 cut(s) 775
BstX2I RGATCY 4 cut(s) 247, 479, 883, 911
BstYI RGATCY 4 cut(s) 247, 479, 883, 911
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 4 cut(s) 350, 365, 661, 1206
BtsCI GGATG 4 cut(s) 15, 130, 321, 811
BtsIMutI CAGTG 3 cut(s) 185, 532, 1175
Cac8I GCNNGC 2 cut(s) 598, 1185
Cfr13I GGNCC 7 cut(s) 114, 231, 348, 364, 463, 660, 1165
Csp6I GTAC 7 cut(s) 128, 140, 257, 300, 372, 489, 1097
CviAII CATG 7 cut(s) 118, 154, 271, 386, 532, 575, 1174
CviQI GTAC 7 cut(s) 128, 140, 257, 300, 372, 489, 1097
DdeI CTNAG 3 cut(s) 664, 900, 1188
DpnI GATC 9 cut(s) 161, 249, 278, 393, 481, 510, 651, 885, 913
DpnII GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
DraIII CACNNNGTG 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 1072
EarI CTCTTC 1 cut(s) 1072
Eco130I CCWWGG 4 cut(s) 143, 260, 375, 492
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 4 cut(s) 114, 231, 463, 1165
Eco57I CTGAAG 2 cut(s) 717, 1008
EcoO109I RGGNCCY 1 cut(s) 660
EcoRI GAATTC 2 cut(s) 413, 616
EcoRII CCWGG 2 cut(s) 656, 1044
EcoT14I CCWWGG 4 cut(s) 143, 260, 375, 492
ErhI CCWWGG 4 cut(s) 143, 260, 375, 492
FaeI CATG 7 cut(s) 121, 157, 274, 389, 535, 578, 1177
FaqI GGGAC 1 cut(s) 1139
FatI CATG 7 cut(s) 117, 153, 270, 385, 531, 574, 1173
FauNDI CATATG 1 cut(s) 943
Fnu4HI GCNGC 2 cut(s) 363, 764
FokI GGATG 4 cut(s) 22, 117, 328, 818
Fsp4HI GCNGC 2 cut(s) 363, 764
FspBI CTAG 4 cut(s) 71, 305, 420, 624
GluI GCNGC 2 cut(s) 363, 764
GsuI CTGGAG 3 cut(s) 225, 429, 771
HaeIII GGCC 4 cut(s) 350, 365, 661, 1206
Hin1II CATG 7 cut(s) 121, 157, 274, 389, 535, 578, 1177
HincII GTYRAC 1 cut(s) 906
HindII GTYRAC 1 cut(s) 906
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 2 cut(s) 587, 857
HphI GGTGA 4 cut(s) 112, 612, 775, 833
Hpy166II GTNNAC 3 cut(s) 114, 302, 906
Hpy188I TCNGA 1 cut(s) 853
Hpy8I GTNNAC 3 cut(s) 114, 302, 906
HpyAV CCTTC 5 cut(s) 551, 731, 983, 1023, 1217
HpyCH4III ACNGT 2 cut(s) 189, 812
HpyCH4V TGCA 4 cut(s) 4, 584, 596, 1173
HpyF3I CTNAG 3 cut(s) 664, 900, 1188
Hsp92II CATG 7 cut(s) 121, 157, 274, 389, 535, 578, 1177
Kzo9I GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 1 cut(s) 775
LweI GCATC 1 cut(s) 571
MaeI CTAG 4 cut(s) 71, 305, 420, 624
MaeIII GTNAC 2 cut(s) 602, 821
MalI GATC 9 cut(s) 161, 249, 278, 393, 481, 510, 651, 885, 913
MboI GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
MboII GAAGA 5 cut(s) 710, 1059, 1061, 1062, 1068
MflI RGATCY 4 cut(s) 247, 479, 883, 911
MluCI AATT 9 cut(s) 413, 616, 677, 715, 795, 846, 895, 1040, 1113
MlyI GAGTC 2 cut(s) 581, 866
MseI TTAA 3 cut(s) 680, 845, 1083
MslI CAYNNNNRTG 2 cut(s) 579, 1178
MspR9I CCNGG 2 cut(s) 658, 1046
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 2 cut(s) 658, 1046
NdeI CATATG 1 cut(s) 943
NdeII GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
NlaIII CATG 7 cut(s) 121, 157, 274, 389, 535, 578, 1177
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 821
NspI RCATGY 3 cut(s) 157, 274, 389
PciI ACATGT 3 cut(s) 153, 270, 385
PctI GAATGC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 1174
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 2 cut(s) 364, 765
PleI GAGTC 2 cut(s) 581, 865
PpsI GAGTC 2 cut(s) 581, 865
PscI ACATGT 3 cut(s) 153, 270, 385
PshBI ATTAAT 1 cut(s) 1083
Psp6I CCWGG 2 cut(s) 656, 1044
PspGI CCWGG 2 cut(s) 656, 1044
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 7 cut(s) 114, 231, 348, 364, 463, 660, 1165
PsuI RGATCY 4 cut(s) 247, 479, 883, 911
RsaI GTAC 7 cut(s) 129, 141, 258, 301, 373, 490, 1098
RsaNI GTAC 7 cut(s) 128, 140, 257, 300, 372, 489, 1097
RseI CAYNNNNRTG 2 cut(s) 579, 1178
SaqAI TTAA 3 cut(s) 680, 845, 1083
SatI GCNGC 2 cut(s) 363, 764
Sau3AI GATC 9 cut(s) 159, 247, 276, 391, 479, 508, 649, 883, 911
Sau96I GGNCC 7 cut(s) 114, 231, 348, 364, 463, 660, 1165
SchI GAGTC 2 cut(s) 581, 866
ScrFI CCNGG 2 cut(s) 658, 1046
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 5 cut(s) 123, 240, 357, 472, 1029
SinI GGWCC 4 cut(s) 114, 231, 463, 1165
SmiMI CAYNNNNRTG 2 cut(s) 579, 1178
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 9 cut(s) 413, 616, 677, 715, 795, 846, 895, 1040, 1113
SsiI CCGC 1 cut(s) 362
SspMI CTAG 4 cut(s) 71, 305, 420, 624
StyD4I CCNGG 2 cut(s) 656, 1044
StyI CCWWGG 4 cut(s) 143, 260, 375, 492
TaaI ACNGT 2 cut(s) 189, 812
TaqI TCGA 1 cut(s) 1122
TaqII GACCGA 1 cut(s) 480
TasI AATT 9 cut(s) 413, 616, 677, 715, 795, 846, 895, 1040, 1113
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 365
Tru1I TTAA 3 cut(s) 680, 845, 1083
Tru9I TTAA 3 cut(s) 680, 845, 1083
TscAI CASTG 3 cut(s) 192, 532, 1175
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 1 cut(s) 763
Tsp45I GTSAC 1 cut(s) 821
TspDTI ATGAA 4 cut(s) 26, 966, 1062, 1108
TspRI CASTG 3 cut(s) 192, 532, 1175
Van91I CCANNNNNTGG 1 cut(s) 1174
VpaK11BI GGWCC 4 cut(s) 114, 231, 463, 1165
VspI ATTAAT 1 cut(s) 1083
XapI RAATTY 4 cut(s) 413, 616, 715, 1040
XceI RCATGY 3 cut(s) 157, 274, 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XspI CTAG 4 cut(s) 71, 305, 420, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.