Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

12545787 .. 12549173

Gene Structure 3387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTGAAGTCGTTTAGTCTAAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAGTCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACACGTTGATGAGATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGATATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGGTAGGACAGATTTTCTGTTTCAAGGGTACCTTTTCTTTTTGCTTAATCCCGAAATCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

4.56

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	1 cut(s)	451
AfaI	GTAC	3 cut(s)	200, 455, 511
AflIII	ACRYGT	2 cut(s)	154, 437
AgsI	TTSAA	4 cut(s)	7, 139, 371, 505
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	70, 106, 131, 143, 390
AluI	AGCT	5 cut(s)	70, 106, 131, 143, 390
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	297, 377
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	97, 205
AvaII	GGWCC	2 cut(s)	297, 377
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	464
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	4 cut(s)	42, 86, 210, 465
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	297, 377
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	297, 377
BmiI	GGNNCC	3 cut(s)	298, 379, 511
BmrFI	CCNGG	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
Bpu14I	TTCGAA	2 cut(s)	97, 205
BpuEI	CTTGAG	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	464
BslFI	GGGAC	2 cut(s)	310, 363
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	310, 363
Bsp119I	TTCGAA	2 cut(s)	97, 205
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	3 cut(s)	298, 379, 511
BspMI	ACCTGC	1 cut(s)	308
BspT104I	TTCGAA	2 cut(s)	97, 205
BspT107I	GGYRCC	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	328
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	198
BstBI	TTCGAA	2 cut(s)	97, 205
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	20, 332, 474
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	297, 377
Csp6I	GTAC	3 cut(s)	199, 454, 510
CviAII	CATG	2 cut(s)	33, 304
CviJI	RGCY	7 cut(s)	70, 106, 131, 143, 192, 271, 390
CviKI_1	RGCY	7 cut(s)	70, 106, 131, 143, 192, 271, 390
CviQI	GTAC	3 cut(s)	199, 454, 510
DdeI	CTNAG	3 cut(s)	20, 332, 474
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	297, 377
EcoO109I	RGGNCCY	2 cut(s)	297, 377
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	2 cut(s)	36, 307
FaiI	YATR	5 cut(s)	34, 116, 305, 420, 429
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	2 cut(s)	310, 363
FatI	CATG	2 cut(s)	32, 303
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	4 cut(s)	42, 86, 210, 465
Hin1II	CATG	2 cut(s)	36, 307
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	89, 344
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	361, 475
Hpy188III	TCNNGA	2 cut(s)	341, 532
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	156, 439
HpyCH4V	TGCA	3 cut(s)	292, 303, 422
HpyF3I	CTNAG	3 cut(s)	20, 332, 474
HpySE526I	ACGT	2 cut(s)	156, 439
Hsp92II	CATG	2 cut(s)	36, 307
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	174, 213, 240, 253, 313, 467
MaeI	CTAG	4 cut(s)	42, 86, 210, 465
MaeII	ACGT	2 cut(s)	156, 439
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	68, 131, 301
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	98, 338
MnlI	CCTC	4 cut(s)	117, 246, 249, 348
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	2 cut(s)	434, 527
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	36, 307
NlaIV	GGNNCC	3 cut(s)	298, 379, 511
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	2 cut(s)	97, 205
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PleI	GAGTC	2 cut(s)	97, 338
PpsI	GAGTC	2 cut(s)	97, 338
PpuMI	RGGWCCY	2 cut(s)	297, 377
Psp5II	RGGWCCY	2 cut(s)	297, 377
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	298, 379, 511
PspPI	GGNCC	2 cut(s)	297, 377
PspPPI	RGGWCCY	2 cut(s)	297, 377
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	3 cut(s)	200, 455, 511
RsaNI	GTAC	3 cut(s)	199, 454, 510
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	434, 527
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	297, 377
SchI	GAGTC	2 cut(s)	98, 338
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	464
SfcI	CTRYAG	1 cut(s)	78
SfuI	TTCGAA	2 cut(s)	97, 205
SinI	GGWCC	2 cut(s)	297, 377
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	4 cut(s)	42, 86, 210, 465
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	32
TaiI	ACGT	2 cut(s)	159, 442
TaqI	TCGA	3 cut(s)	97, 205, 415
TasI	AATT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	434, 527
Tru9I	TTAA	2 cut(s)	434, 527
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	62, 116
VpaK11BI	GGWCC	2 cut(s)	297, 377
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	4 cut(s)	42, 86, 210, 465
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.