Rorug07G0017600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001166
Physical Location & Seq
Reverse (-)
1383245 .. 1384219
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0017600.1

Sequence Viewer

Length: 768 bp
ATGGCTAGTCTCCGGTCCTGTTTCGTCATAGTCATGATTGTTCTCAACCTAGGCATGGCTGCCGCCGGTCTCTCTCTTAAGCGTGGTTGGCAGCATGCTACTGCAACGTTTTACGGCGACATGAATGGTGATGAAACCTTGCAGGGAGCTTGTGGATATGAAAATGTTATTGAAGAAGGATACGGCCTTCAAACCACAGCATTAAGCGAGGCATTGTTCAACAAAGGACGTACTTGCGGAGCTTGTTTCCAAATAATGTGTTTTAACTCTTCAGAATGGTGCAAAAAAGGTGCAGGCGCAATCCGGGTCACAGCTACCAACTACTGCCCTCCAACCTACGATGAGGAAGCTCCTTGGTGCAACCCGCCTCGCAAGCACTTTGATCTATCCATGCCTATGTTCTTGAACATTGCAGAATACAAAGCAGGAATTGTCCCGGTTGTCTATCGCCGAGTTAAGTGCCGCAAGAGTGGTGGTATCAAGTTCGTGTTTAAGGGAAATGAAGGTTGGTTGCTTGTGCTAGTGTACAATGTTGGTGGTGCTGGACAGGTTGTTGATGTGAAGATAAAGGGTTCTCAGACTGGTTGGATACAAATGGAACGTAATTGGGGCGTAAACTGGCAGGTATCGGATGATACCGTGCAGAAGTTACAGGGCCAGAGCTTGTCTTTCCAAGTTACCACAAGGGATGGTAGAATGGTGCAGTCCGACAATGTCGCCCCGAAGGATTGGCAATTGGGGAAGACATATGAGGGAAGAAACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.3

Weight (kDa)

8.68

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 33 - 131 2.8e-06 EXPB1-like domain 1
DPBB_1 PF03330 65 - 149 7.3e-20 Lytic transglycolase
Expansin_C PF01357 160 - 241 9.7e-24 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 613
AciI CCGC 4 cut(s) 63, 237, 365, 463
AclI AACGTT 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 232, 527
AfiI CCNNNNNNNGG 1 cut(s) 55
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 173, 191, 220, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AluBI AGCT 5 cut(s) 149, 242, 314, 350, 663
AluI AGCT 5 cut(s) 149, 242, 314, 350, 663
Alw26I GTCTC 2 cut(s) 14, 74
AoxI GGCC 2 cut(s) 184, 655
ApeKI GCWGC 2 cut(s) 59, 91
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 15, 655
AsuC2I CCSGG 2 cut(s) 305, 437
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 15
AvrII CCTAGG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 2 cut(s) 46, 103
BccI CCATC 1 cut(s) 683
BceAI ACGGC 2 cut(s) 130, 199
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciVI GTATCC 2 cut(s) 173, 582
BcnI CCSGG 2 cut(s) 305, 437
BcoDI GTCTC 2 cut(s) 14, 74
BfaI CTAG 4 cut(s) 6, 50, 521, 766
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 613
BfuI GTATCC 2 cut(s) 173, 582
BisI GCNGC 4 cut(s) 60, 63, 92, 463
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 4 cut(s) 61, 64, 93, 464
Bme1390I CCNGG 2 cut(s) 305, 437
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 655
BmrFI CCNGG 2 cut(s) 305, 437
BpiI GAAGAC 1 cut(s) 749
BpuMI CCSGG 2 cut(s) 305, 437
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 49, 353
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 586, 623
Bse3DI GCAATG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 49, 353
BseGI GGATG 2 cut(s) 637, 694
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 586, 623
BseXI GCAGC 2 cut(s) 46, 103
BsgI GTGCAG 3 cut(s) 312, 662, 722
BshFI GGCC 2 cut(s) 186, 657
BsiSI CCGG 4 cut(s) 13, 66, 304, 437
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 2 cut(s) 14, 74
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 2 cut(s) 186, 657
Bso31I GGTCTC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 4 cut(s) 63, 237, 365, 463
BspANI GGCC 2 cut(s) 186, 657
BspCNI CTCAG 1 cut(s) 589
BspHI TCATGA 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 2 cut(s) 586, 623
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 49, 353
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 49, 353
Bst4CI ACNGT 1 cut(s) 640
Bst6I CTCTTC 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 96, 295, 374
BstDEI CTNAG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 637, 694
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 2 cut(s) 14, 74
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 88, 373
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 303, 435
BstV1I GCAGC 2 cut(s) 46, 103
BstV2I GAAGAC 1 cut(s) 749
BsuI GTATCC 2 cut(s) 173, 582
BsuRI GGCC 2 cut(s) 186, 657
BtsCI GGATG 2 cut(s) 637, 694
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 3 cut(s) 96, 295, 374
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 15, 655
Csp6I GTAC 2 cut(s) 231, 526
CspCI CAANNNNNGTGG 4 cut(s) 454, 489, 517, 552
CviAII CATG 5 cut(s) 34, 55, 95, 121, 391
CviJI RGCY 9 cut(s) 5, 59, 149, 186, 242, 314, 350, 657, 663
CviKI_1 RGCY 9 cut(s) 5, 59, 149, 186, 242, 314, 350, 657, 663
CviQI GTAC 2 cut(s) 231, 526
DdeI CTNAG 1 cut(s) 576
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 49, 353
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 49, 353
ErhI CCWWGG 2 cut(s) 49, 353
FaeI CATG 5 cut(s) 37, 58, 98, 124, 394
FaqI GGGAC 1 cut(s) 419
FatI CATG 5 cut(s) 33, 54, 94, 120, 390
FauI CCCGC 1 cut(s) 372
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 60, 63, 92, 463
FokI GGATG 2 cut(s) 644, 701
Fsp4HI GCNGC 4 cut(s) 60, 63, 92, 463
FspBI CTAG 4 cut(s) 6, 50, 521, 766
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 60, 63, 92, 463
HaeIII GGCC 2 cut(s) 186, 657
HapII CCGG 4 cut(s) 13, 66, 304, 437
HhaI GCGC 1 cut(s) 299
Hin1II CATG 5 cut(s) 37, 58, 98, 124, 394
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HpaII CCGG 4 cut(s) 13, 66, 304, 437
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 526, 616
Hpy188I TCNGA 4 cut(s) 274, 579, 631, 709
Hpy188III TCNNGA 2 cut(s) 34, 403
Hpy8I GTNNAC 2 cut(s) 526, 616
HpyAV CCTTC 4 cut(s) 170, 197, 497, 718
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4IV ACGT 3 cut(s) 107, 229, 601
HpyCH4V TGCA 8 cut(s) 104, 142, 282, 293, 360, 413, 643, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 373
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 3 cut(s) 107, 229, 601
Hsp92II CATG 5 cut(s) 37, 58, 98, 124, 394
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 3 cut(s) 146, 239, 355
Lsp1109I GCAGC 2 cut(s) 46, 103
MaeI CTAG 4 cut(s) 6, 50, 521, 766
MaeII ACGT 3 cut(s) 107, 229, 601
MaeIII GTNAC 3 cut(s) 307, 648, 676
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 5 cut(s) 185, 261, 574, 754, 768
MfeI CAATTG 1 cut(s) 734
MluCI AATT 3 cut(s) 429, 604, 734
MmeI TCCRAC 3 cut(s) 356, 566, 732
MnlI CCTC 5 cut(s) 202, 337, 339, 378, 745
MseI TTAA 5 cut(s) 78, 203, 264, 456, 492
MslI CAYNNNNRTG 2 cut(s) 32, 395
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 4 cut(s) 13, 66, 304, 437
MspR9I CCNGG 2 cut(s) 305, 437
MunI CAATTG 1 cut(s) 734
MwoI GCNNNNNNNGC 2 cut(s) 88, 373
NciI CCSGG 2 cut(s) 305, 437
NdeI CATATG 1 cut(s) 748
NdeII GATC 1 cut(s) 382
NlaIII CATG 5 cut(s) 37, 58, 98, 124, 394
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PagI TCATGA 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 713
PkrI GCNGC 4 cut(s) 61, 64, 93, 464
Psp1406I AACGTT 1 cut(s) 107
PspPI GGNCC 2 cut(s) 15, 655
PsyI GACNNNGTC 1 cut(s) 713
RsaI GTAC 2 cut(s) 232, 527
RsaNI GTAC 2 cut(s) 231, 526
RseI CAYNNNNRTG 2 cut(s) 32, 395
SaqAI TTAA 5 cut(s) 78, 203, 264, 456, 492
SatI GCNGC 4 cut(s) 60, 63, 92, 463
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 2 cut(s) 15, 655
ScrFI CCNGG 2 cut(s) 305, 437
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 32, 395
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 98
Sse9I AATT 3 cut(s) 429, 604, 734
SsiI CCGC 4 cut(s) 63, 237, 365, 463
SspMI CTAG 4 cut(s) 6, 50, 521, 766
StyD4I CCNGG 2 cut(s) 303, 435
StyI CCWWGG 2 cut(s) 49, 353
TaaI ACNGT 1 cut(s) 640
TaiI ACGT 3 cut(s) 110, 232, 604
TasI AATT 3 cut(s) 429, 604, 734
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 65, 465
Tru1I TTAA 5 cut(s) 78, 203, 264, 456, 492
Tru9I TTAA 5 cut(s) 78, 203, 264, 456, 492
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 59, 91
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 137, 147, 174, 516
Tth111I GACNNNGTC 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 4 cut(s) 6, 50, 521, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.