Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Forward (+)

2732093 .. 2735127

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04660.t13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATGATGGTCTTGGGAAGATAAAGGTTATTCCAGATCATTTTAAGGCGTCCCCACCCAGTGTTGATTCTTCTCAAAAAGATAGGTCTCATAGCTGGAGTCGAAGAAAATTAAGAACTGCTGCACACATGTTGAAGTTGAACTTTTTTAGTCTAAGGGGGCTACCATGGGGTTCTAGCACAGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACACGTTGACGAAATTCTGCGATCTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCATTACCAGGAGAACCTCCTCCCCTTGATGATTCTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTACAAGGGACCTGCATGTTCTTCTATTTGTTATCCACAGATATAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGATATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGCTGCATTACGAATTGACTGCAAATTGGACAAGTCGGATGCTACAATCCCAAATGGCTCATCTCAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

235

Amino Acids

26.46

Weight (kDa)

5.02

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	107 - 216	7e-06	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AciI	CCGC	1 cut(s)	586
AcsI	RAATTY	2 cut(s)	300, 622
AcyI	GRCGYC	1 cut(s)	50
AdeI	CACNNNGTG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	335, 590
AflIII	ACRYGT	3 cut(s)	129, 289, 572
AgsI	TTSAA	5 cut(s)	136, 142, 274, 506, 622
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	361, 626
AjuI	GAANNNNNNNTTGG	4 cut(s)	266, 298, 614, 646
AluBI	AGCT	6 cut(s)	96, 205, 241, 266, 278, 525
AluI	AGCT	6 cut(s)	96, 205, 241, 266, 278, 525
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	93, 323
ApeKI	GCWGC	2 cut(s)	122, 635
ApoI	RAATTY	2 cut(s)	300, 622
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	432, 512
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	2 cut(s)	232, 340
AvaII	GGWCC	2 cut(s)	432, 512
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	109, 622
BccI	CCATC	2 cut(s)	2, 179
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BciT130I	CCWGG	2 cut(s)	363, 628
BcoDI	GTCTC	2 cut(s)	93, 323
BfaI	CTAG	4 cut(s)	177, 221, 345, 600
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	123, 636
BlsI	GCNGC	2 cut(s)	124, 637
Bme1390I	CCNGG	2 cut(s)	363, 628
Bme18I	GGWCC	2 cut(s)	432, 512
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	432, 512
BmiI	GGNNCC	2 cut(s)	433, 514
BmrFI	CCNGG	2 cut(s)	363, 628
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BpmI	CTGGAG	1 cut(s)	118
Bpu14I	TTCGAA	2 cut(s)	232, 340
BpuEI	CTTGAG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	60, 407
BseBI	CCWGG	2 cut(s)	363, 628
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	10, 676
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	60, 407
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	109, 622
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	599
BslFI	GGGAC	3 cut(s)	37, 445, 498
BsmAI	GTCTC	2 cut(s)	93, 323
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	3 cut(s)	37, 445, 498
Bso31I	GGTCTC	1 cut(s)	93
Bsp119I	TTCGAA	2 cut(s)	232, 340
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	37, 308
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	433, 514
BspMI	ACCTGC	1 cut(s)	443
BspT104I	TTCGAA	2 cut(s)	232, 340
BspTNI	GGTCTC	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	60, 407
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	37, 308
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	363, 628
Bst4CI	ACNGT	1 cut(s)	618
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	2 cut(s)	232, 340
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	155, 609, 696
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	10, 676
BstKTI	GATC	2 cut(s)	40, 311
BstMAI	GTCTC	2 cut(s)	93, 323
BstMBI	GATC	2 cut(s)	37, 308
BstNI	CCWGG	2 cut(s)	363, 628
BstNSI	RCATGY	2 cut(s)	133, 442
BstSCI	CCNGG	2 cut(s)	361, 626
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	109, 622
BtgI	CCRYGG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	10, 676
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	432, 512
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	334, 589
CviAII	CATG	3 cut(s)	130, 168, 439
CviQI	GTAC	2 cut(s)	334, 589
DdeI	CTNAG	3 cut(s)	155, 609, 696
DpnI	GATC	2 cut(s)	39, 310
DpnII	GATC	2 cut(s)	37, 308
DraIII	CACNNNGTG	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	432, 512
EcoO109I	RGGNCCY	2 cut(s)	432, 512
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	361, 626
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	3 cut(s)	133, 171, 442
FaiI	YATR	8 cut(s)	93, 131, 169, 251, 440, 467, 555, 564
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	3 cut(s)	37, 445, 498
FatI	CATG	3 cut(s)	129, 167, 438
Fnu4HI	GCNGC	2 cut(s)	123, 636
FokI	GGATG	2 cut(s)	17, 683
Fsp4HI	GCNGC	2 cut(s)	123, 636
FspBI	CTAG	4 cut(s)	177, 221, 345, 600
GluI	GCNGC	2 cut(s)	123, 636
GsuI	CTGGAG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	133, 171, 442
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	5 cut(s)	68, 100, 224, 386, 479
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	295, 351
Hpy188I	TCNGA	5 cut(s)	391, 496, 610, 670, 699
Hpy188III	TCNNGA	2 cut(s)	35, 476
Hpy8I	GTNNAC	2 cut(s)	295, 351
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4IV	ACGT	2 cut(s)	291, 574
HpyCH4V	TGCA	5 cut(s)	125, 438, 557, 638, 654
HpyF3I	CTNAG	3 cut(s)	155, 609, 696
HpySE526I	ACGT	2 cut(s)	291, 574
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	133, 171, 442
Kzo9I	GATC	2 cut(s)	37, 308
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	109, 622
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	4 cut(s)	177, 221, 345, 600
MaeII	ACGT	2 cut(s)	291, 574
MalI	GATC	2 cut(s)	39, 310
MboI	GATC	2 cut(s)	37, 308
MboII	GAAGA	6 cut(s)	31, 63, 117, 203, 266, 436
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	6 cut(s)	110, 281, 300, 622, 645, 656
MlyI	GAGTC	2 cut(s)	109, 473
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	4 cut(s)	252, 381, 384, 483
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	45, 113, 569
MspR9I	CCNGG	2 cut(s)	363, 628
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	363, 628
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	37, 308
NlaIII	CATG	3 cut(s)	133, 171, 442
NlaIV	GGNNCC	2 cut(s)	433, 514
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	133, 442
NspV	TTCGAA	2 cut(s)	232, 340
PciI	ACATGT	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	68, 224, 386
PkrI	GCNGC	2 cut(s)	124, 637
PleI	GAGTC	2 cut(s)	108, 473
PpsI	GAGTC	2 cut(s)	108, 473
PpuMI	RGGWCCY	2 cut(s)	432, 512
PscI	ACATGT	1 cut(s)	129
Psp5II	RGGWCCY	2 cut(s)	432, 512
Psp6I	CCWGG	2 cut(s)	361, 626
PspGI	CCWGG	2 cut(s)	361, 626
PspN4I	GGNNCC	2 cut(s)	433, 514
PspPI	GGNCC	2 cut(s)	432, 512
PspPPI	RGGWCCY	2 cut(s)	432, 512
RsaI	GTAC	2 cut(s)	335, 590
RsaNI	GTAC	2 cut(s)	334, 589
SaqAI	TTAA	3 cut(s)	45, 113, 569
SatI	GCNGC	2 cut(s)	123, 636
Sau3AI	GATC	2 cut(s)	37, 308
Sau96I	GGNCC	2 cut(s)	432, 512
SchI	GAGTC	2 cut(s)	109, 473
ScrFI	CCNGG	2 cut(s)	363, 628
SduI	GDGCHC	1 cut(s)	599
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	2 cut(s)	232, 340
SinI	GGWCC	2 cut(s)	432, 512
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	110, 281, 300, 622, 645, 656
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	4 cut(s)	177, 221, 345, 600
StyD4I	CCNGG	2 cut(s)	361, 626
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	618
TaiI	ACGT	2 cut(s)	294, 577
TaqI	TCGA	4 cut(s)	103, 232, 340, 550
TasI	AATT	6 cut(s)	110, 281, 300, 622, 645, 656
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	68, 224, 386
Tru1I	TTAA	3 cut(s)	45, 113, 569
Tru9I	TTAA	3 cut(s)	45, 113, 569
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	122, 635
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	432, 512
XapI	RAATTY	2 cut(s)	300, 622
XceI	RCATGY	2 cut(s)	133, 442
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	4 cut(s)	177, 221, 345, 600
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.