Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

57358660 .. 57359828

Gene Structure 1169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATTCTCTCTCCCCCCGACTCTCCATCAAATGCCCTCTCTCTTCCTCTTCATCCTCCGGCGACGGCGGCCAAGACGCCTACGGCTATGGACAGTACCATTAGATCCGTATGTTCATCTTGGCGGCAAGAAGCTCAAGCTTGCTTGCAATTTGGGACACAGGATAGGTCCCATAGCTGGAGTCGAAGAAAATTAAGAACTGTTGCATACATGTTGAACTTGTTTAGTCTAAGGGGTCTGCCATGGGGTTCTAGCACGGATGGTGAGAAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACAAAAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

9.3

Isoelectric Point (pI)

74.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 124
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	5 cut(s)	134, 140, 177, 280, 317
AluI	AGCT	5 cut(s)	134, 140, 177, 280, 317
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	168
BccI	CCATC	2 cut(s)	34, 254
BceAI	ACGGC	2 cut(s)	81, 99
BfaI	CTAG	2 cut(s)	252, 296
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	69, 125
BlsI	GCNGC	2 cut(s)	70, 126
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	52, 265
BseLI	CCNNNNNNNGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	154, 169
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	154, 169
BsnI	GGCC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	68, 124
BspANI	GGCC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	99
BspT104I	TTCGAA	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	104
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	95, 202
Bst6I	CTCTTC	2 cut(s)	48, 54
BstACI	GRCGYC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	142, 146, 319
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	52, 265
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	52, 265
Cac8I	GCNNGC	3 cut(s)	142, 146, 319
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	211, 243
CviJI	RGCY	7 cut(s)	71, 86, 134, 140, 177, 280, 317
CviKI_1	RGCY	7 cut(s)	71, 86, 134, 140, 177, 280, 317
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	48, 54
EarI	CTCTTC	2 cut(s)	48, 54
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	214, 246
FaiI	YATR	6 cut(s)	89, 112, 174, 208, 212, 244
FaqI	GGGAC	2 cut(s)	154, 169
FatI	CATG	2 cut(s)	210, 242
Fnu4HI	GCNGC	2 cut(s)	69, 125
FokI	GGATG	2 cut(s)	39, 272
Fsp4HI	GCNGC	2 cut(s)	69, 125
FspBI	CTAG	2 cut(s)	252, 296
GluI	GCNGC	2 cut(s)	69, 125
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	214, 246
HindIII	AAGCTT	2 cut(s)	138, 315
HinfI	GANTC	4 cut(s)	4, 20, 181, 299
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	95, 202
HpyCH4V	TGCA	2 cut(s)	148, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	214, 246
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	3 cut(s)	72, 146, 163
MaeI	CTAG	2 cut(s)	252, 296
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	35, 41, 198
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	149, 191
MlyI	GAGTC	2 cut(s)	14, 190
MnlI	CCTC	3 cut(s)	47, 57, 66
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	194
MspI	CCGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	214, 246
NlaIV	GGNNCC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	307
PciI	ACATGT	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	4, 299
PkrI	GCNGC	2 cut(s)	70, 126
PleI	GAGTC	2 cut(s)	14, 189
PpsI	GAGTC	2 cut(s)	14, 189
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	69, 125
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	14, 190
SetI	ASST	7 cut(s)	136, 142, 170, 179, 276, 282, 319
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	307
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	149, 191
SsiI	CCGC	2 cut(s)	68, 124
SspMI	CTAG	2 cut(s)	252, 296
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	95, 202
TaqI	TCGA	2 cut(s)	184, 307
TasI	AATT	2 cut(s)	149, 191
TauI	GCSGC	2 cut(s)	71, 127
TfiI	GAWTC	2 cut(s)	4, 299
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	41, 105
TspGWI	ACGGA	2 cut(s)	97, 272
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	2 cut(s)	252, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.