Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

34446789 .. 34453552

Gene Structure 6764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAATATCAATCAACACTGGGATCAATTTTCATACCACATGCAAGTCAAACAGTGGTCGGATTCACCGGAAAATGCAGAAACATCGGAGATCAACAATCCCAAGCCGATGTCGTCTATGGAGATTGATAATCCCAAGCCAAACACCTCCAATCAGTCCTATAGCTGGAGTCGAAGAAAATTAAGAACTGCTGCATGCATGTTGAACTTGTTTAGTCTAAGGGGGCTGACAAGGGGTTCTAGCATGGATGGTGAAAAAAAGAATCACTTCGAACAAAAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAGTGGACAACACTACCAAGAGAACCTCCTCCACTTGATGATACTGATGTTGATGACTGGCTTCCACGCGTTGTTATCTTGCAAGGGACCTGCATGTTCCTCTACTTGTTATCTACAGTTTTCATTTCAAATACTAATACACTACTAGAAATTTCCCCAAAAGCAAAAACTTTCTCATTTCTCCAAGTGGATTGCGAATTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

174

Amino Acids

20.19

Weight (kDa)

5.37

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccII	CGCG	1 cut(s)	387
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	468, 515
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	205, 313, 447
AluBI	AGCT	4 cut(s)	165, 280, 305, 317
AluI	AGCT	4 cut(s)	165, 280, 305, 317
AlwI	GGATC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	468, 515
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	57, 263
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	405
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BfaI	CTAG	2 cut(s)	240, 464
BfmI	CTRYAG	2 cut(s)	160, 432
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	406
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	1 cut(s)	187
Bpu14I	TTCGAA	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	23, 380
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	23, 380
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	22, 90
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	23, 380
BssMI	GATC	2 cut(s)	22, 90
Bst4CI	ACNGT	2 cut(s)	54, 436
Bst6I	CTCTTC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	196, 282
BstDEI	CTNAG	2 cut(s)	218, 318
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	25, 93
BstMBI	GATC	2 cut(s)	22, 90
BstNSI	RCATGY	4 cut(s)	43, 198, 202, 415
BstSFI	CTRYAG	2 cut(s)	160, 432
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	16, 59, 326
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	196, 282
Cfr13I	GGNCC	1 cut(s)	405
CviAII	CATG	5 cut(s)	40, 195, 199, 244, 412
CviJI	RGCY	8 cut(s)	106, 139, 165, 226, 280, 305, 317, 379
CviKI_1	RGCY	8 cut(s)	106, 139, 165, 226, 280, 305, 317, 379
DdeI	CTNAG	2 cut(s)	218, 318
DpnI	GATC	2 cut(s)	24, 92
DpnII	GATC	2 cut(s)	22, 90
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	515
EcoT22I	ATGCAT	1 cut(s)	200
FaeI	CATG	5 cut(s)	43, 198, 202, 247, 415
FaiI	YATR	9 cut(s)	34, 41, 119, 162, 196, 200, 245, 290, 413
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	5 cut(s)	39, 194, 198, 243, 411
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	240, 464
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	187
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	5 cut(s)	43, 198, 202, 247, 415
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	62, 169, 262
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	57, 263
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	61, 88
Hpy8I	GTNNAC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	54, 436
HpyCH4V	TGCA	6 cut(s)	43, 77, 194, 198, 400, 411
HpyF3I	CTNAG	2 cut(s)	218, 318
Hsp92II	CATG	5 cut(s)	43, 198, 202, 247, 415
Kzo9I	GATC	2 cut(s)	22, 90
LpnPI	CCDG	5 cut(s)	4, 81, 151, 361, 421
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	240, 464
MalI	GATC	2 cut(s)	24, 92
MboI	GATC	2 cut(s)	22, 90
MboII	GAAGA	2 cut(s)	186, 305
MluCI	AATT	4 cut(s)	26, 179, 468, 515
MluI	ACGCGT	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	157, 291, 354, 357, 428
Mph1103I	ATGCAT	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	182
MspI	CCGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	387
NdeII	GATC	2 cut(s)	22, 90
NlaIII	CATG	5 cut(s)	43, 198, 202, 247, 415
NlaIV	GGNNCC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	200
NspI	RCATGY	4 cut(s)	43, 198, 202, 415
NspV	TTCGAA	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	62, 262
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	405
PspPPI	RGGWCCY	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	22, 90
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	178
SetI	ASST	7 cut(s)	149, 167, 282, 307, 319, 346, 410
SfcI	CTRYAG	2 cut(s)	160, 432
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	405
SphI	GCATGC	1 cut(s)	198
Sse9I	AATT	4 cut(s)	26, 179, 468, 515
SspMI	CTAG	2 cut(s)	240, 464
TaaI	ACNGT	2 cut(s)	54, 436
TaqI	TCGA	2 cut(s)	172, 270
TasI	AATT	4 cut(s)	26, 179, 468, 515
TfiI	GAWTC	2 cut(s)	62, 262
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	3 cut(s)	23, 59, 326
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	17, 21, 430
TspRI	CASTG	3 cut(s)	23, 59, 326
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	2 cut(s)	468, 515
XceI	RCATGY	4 cut(s)	43, 198, 202, 415
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	240, 464
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.