Rh7CG149100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001166
Physical Location & Seq
Reverse (-)
12185897 .. 12188024
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG149100.1

Sequence Viewer

Length: 1284 bp
ATGGGAAGGATAGTAGGCAGTCAACAAGAAGTGATCGAGCATGACAAGGATAGATACAAGGATGGTGCAAGTAATAAAGTCAAGTATGGAGAAGACATTGACAGTGATATTAGGCACAAGGATGGTGCATGTAATAAAGTCAACTATGGAGAAGACACCGACACAGATAGTAGGCACAAGGATGCAACAAGTTATATTAGTAAGTATGGAGAAGATGCTGATAGGGACAAGGATGGTGCAAGTTATAAAGTTACTCATAGGGAAGCTGCTAACAGAGATAGTAGGCACAATGATGCTGCAAGATGTAAAGTTAAGTATGAAGAAGATGCTGACAAAGATAGTAGGCACAAGGATGCTGCAAGATATAAAGCCAAGTACGAAGAAGATGCTGCCAGAGATAGTAGGCACAGGGATCGCAGGGGAAGTAGAGGTGATGATAGAGTGGACCATGACTATAGTACATCCCGAAGTACCAAGGAACGACATGTTGATCCAGAAAACAATAATGGAGGAGACACTGTGTATAATAATGATAAGAGAAATAGAGCTGATGATAGAGAGGACCAAGCCTATAGCAGATCTAGAAGGACCAAGGAACAACATGTTGATCCTGAAAAGAATGATGGAGGGTACACTAGGTATAAGGATGATAGGGGAAATAGTGCTGATGATAGAGAGGACCAAAACTATAGCAGATCCCAAAGTACCAAGGAACGACATGTTGATCCAGAAAAGAATGCTAGAGAATTCACTAGGTATAATGATGATAGGGGAAATAGAGCTGATGATAGAGAGGACCGAAGCTATAGTAGATCCCGAAGTACCAAGGAACAACATTTTGATCTAGAAAAGAAAAGGAATTCATCTAGCTCTTCTTCTCATCTTTCAAAAGATCAATTCAGGCCCTCAGTCCAAGCAGAATTAAAGTATGGGGAACCTGAAGAAAGAGTAAGGCAAAATTTCCTTCCCTCAATAGAGGTTGCAGATGTTTCTGGAGTTCTTGAGCAGCCTTGTTTGTATAAGCTCACCAAGAGACTAATTGACAAGGATGACAATAGTTTCGGTGACTTATCAGTTGAGGGGGATTTAATTTCTGATGAGTCCAAGCTCTCCACTTCTCTTCTGGATCTACCTAATAATTCTAAGTTGACAAGATCTACTGGGGAAAACTATGATAGCAAAACATATGGAAAGAGTAGTGGTGTCAAGGATACCGGTTCATCTTGTGCTGAAGGAAAGGGAAGTTGGCAGTTGCCTTCCAAGAAGATTCCAGGAAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

48.97

Weight (kDa)

6.17

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AclWI GGATC 7 cut(s) 420, 485, 602, 690, 719, 807, 1134
AcsI RAATTY 3 cut(s) 746, 859, 958
AcuI CTGAAG 2 cut(s) 960, 1251
AfaI GTAC 6 cut(s) 377, 460, 472, 632, 706, 823
AflIII ACRYGT 3 cut(s) 484, 601, 718
AgeI ACCGGT 1 cut(s) 1214
AgsI TTSAA 1 cut(s) 888
AjnI CCWGG 1 cut(s) 1270
AjuI GAANNNNNNNTTGG 2 cut(s) 1228, 1260
AluBI AGCT 7 cut(s) 266, 548, 782, 804, 870, 1024, 1108
AluI AGCT 7 cut(s) 266, 548, 782, 804, 870, 1024, 1108
Alw26I GTCTC 2 cut(s) 507, 1027
AlwI GGATC 7 cut(s) 420, 485, 602, 690, 719, 807, 1134
AoxI GGCC 1 cut(s) 902
ApeKI GCWGC 5 cut(s) 266, 296, 356, 389, 1006
ApoI RAATTY 3 cut(s) 746, 859, 958
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
AsiGI ACCGGT 1 cut(s) 1214
AspS9I GGNCC 6 cut(s) 445, 562, 588, 679, 796, 903
AsuHPI GGTGA 3 cut(s) 443, 1018, 1076
AvaII GGWCC 5 cut(s) 445, 562, 588, 679, 796
BbsI GAAGAC 2 cut(s) 99, 159
BbvI GCAGC 5 cut(s) 253, 283, 343, 376, 1018
BccI CCATC 4 cut(s) 56, 116, 227, 617
BcgI CGANNNNNNTGC 4 cut(s) 368, 395, 402, 429
BciT130I CCWGG 1 cut(s) 1272
BciVI GTATCC 1 cut(s) 1204
BcoDI GTCTC 2 cut(s) 507, 1027
BfaI CTAG 6 cut(s) 582, 636, 741, 753, 845, 867
BfmI CTRYAG 4 cut(s) 454, 571, 688, 805
BfuI GTATCC 1 cut(s) 1204
BglII AGATCT 2 cut(s) 578, 1154
BisI GCNGC 5 cut(s) 267, 297, 357, 390, 1007
BlsI GCNGC 5 cut(s) 268, 298, 358, 391, 1008
Bme1390I CCNGG 1 cut(s) 1272
Bme18I GGWCC 5 cut(s) 445, 562, 588, 679, 796
BmgT120I GGNCC 6 cut(s) 445, 562, 588, 679, 796, 903
BmiI GGNNCC 1 cut(s) 936
BmrFI CCNGG 1 cut(s) 1272
BmrI ACTGGG 1 cut(s) 1170
BmsI GCATC 6 cut(s) 172, 205, 283, 316, 343, 376
BmuI ACTGGG 1 cut(s) 1170
BpiI GAAGAC 2 cut(s) 99, 159
BpmI CTGGAG 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 1022
BsaJI CCNNGG 4 cut(s) 474, 591, 708, 825
BsaWI WCCGGW 1 cut(s) 1214
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 1214
Bse1I ACTGG 1 cut(s) 1165
BseBI CCWGG 1 cut(s) 1272
BseDI CCNNGG 4 cut(s) 474, 591, 708, 825
BseGI GGATG 8 cut(s) 67, 127, 187, 238, 358, 461, 652, 1054
BseMII CTCAG 1 cut(s) 921
BseNI ACTGG 1 cut(s) 1165
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 5 cut(s) 253, 283, 343, 376, 1018
BshFI GGCC 1 cut(s) 904
BshTI ACCGGT 1 cut(s) 1214
BsiSI CCGG 1 cut(s) 1215
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 507, 1027
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 904
BspANI GGCC 1 cut(s) 904
BspCNI CTCAG 1 cut(s) 920
BspLI GGNNCC 1 cut(s) 936
BspPI GGATC 7 cut(s) 420, 485, 602, 690, 719, 807, 1134
BspQI GCTCTTC 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 1214
BsrI ACTGG 1 cut(s) 1165
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 4 cut(s) 474, 591, 708, 825
BssT1I CCWWGG 4 cut(s) 474, 591, 708, 825
Bst2UI CCWGG 1 cut(s) 1272
Bst4CI ACNGT 2 cut(s) 104, 520
Bst6I CTCTTC 2 cut(s) 877, 1125
BstDEI CTNAG 2 cut(s) 907, 1143
BstF5I GGATG 8 cut(s) 67, 127, 187, 238, 358, 461, 652, 1054
BstMAI GTCTC 2 cut(s) 507, 1027
BstNI CCWGG 1 cut(s) 1272
BstNSI RCATGY 4 cut(s) 132, 488, 605, 722
BstSCI CCNGG 1 cut(s) 1270
BstSFI CTRYAG 4 cut(s) 454, 571, 688, 805
BstV1I GCAGC 5 cut(s) 253, 283, 343, 376, 1018
BstV2I GAAGAC 2 cut(s) 99, 159
BstX2I RGATCY 5 cut(s) 578, 695, 812, 1126, 1154
BstYI RGATCY 5 cut(s) 578, 695, 812, 1126, 1154
BsuI GTATCC 1 cut(s) 1204
BsuRI GGCC 1 cut(s) 904
BtsCI GGATG 8 cut(s) 67, 127, 187, 238, 358, 461, 652, 1054
BtsIMutI CAGTG 2 cut(s) 109, 516
Cfr10I RCCGGY 1 cut(s) 1214
Cfr13I GGNCC 6 cut(s) 445, 562, 588, 679, 796, 903
Csp6I GTAC 6 cut(s) 376, 459, 471, 631, 705, 822
CspAI ACCGGT 1 cut(s) 1214
CviAII CATG 6 cut(s) 41, 129, 449, 485, 602, 719
CviQI GTAC 6 cut(s) 376, 459, 471, 631, 705, 822
DdeI CTNAG 2 cut(s) 907, 1143
Eam1104I CTCTTC 2 cut(s) 877, 1125
EarI CTCTTC 2 cut(s) 877, 1125
Eco130I CCWWGG 4 cut(s) 474, 591, 708, 825
Eco47I GGWCC 5 cut(s) 445, 562, 588, 679, 796
Eco57I CTGAAG 2 cut(s) 960, 1251
EcoO109I RGGNCCY 1 cut(s) 903
EcoRI GAATTC 2 cut(s) 746, 859
EcoRII CCWGG 1 cut(s) 1270
EcoT14I CCWWGG 4 cut(s) 474, 591, 708, 825
ErhI CCWWGG 4 cut(s) 474, 591, 708, 825
FaeI CATG 6 cut(s) 44, 132, 452, 488, 605, 722
FaqI GGGAC 1 cut(s) 239
FatI CATG 6 cut(s) 40, 128, 448, 484, 601, 718
FauNDI CATATG 1 cut(s) 1186
Fnu4HI GCNGC 5 cut(s) 267, 297, 357, 390, 1007
FokI GGATG 8 cut(s) 74, 134, 194, 245, 365, 448, 659, 1061
Fsp4HI GCNGC 5 cut(s) 267, 297, 357, 390, 1007
FspBI CTAG 6 cut(s) 582, 636, 741, 753, 845, 867
GluI GCNGC 5 cut(s) 267, 297, 357, 390, 1007
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 904
HapII CCGG 1 cut(s) 1215
Hin1II CATG 6 cut(s) 44, 132, 452, 488, 605, 722
HincII GTYRAC 3 cut(s) 23, 142, 1149
HindII GTYRAC 3 cut(s) 23, 142, 1149
HinfI GANTC 2 cut(s) 1100, 1267
HpaII CCGG 1 cut(s) 1215
HphI GGTGA 3 cut(s) 443, 1018, 1076
Hpy166II GTNNAC 5 cut(s) 23, 142, 445, 633, 1149
Hpy188I TCNGA 1 cut(s) 1096
Hpy8I GTNNAC 5 cut(s) 23, 142, 445, 633, 1149
HpyAV CCTTC 4 cut(s) 579, 974, 1226, 1266
HpyCH4III ACNGT 2 cut(s) 104, 520
HpyCH4V TGCA 7 cut(s) 68, 128, 185, 239, 299, 359, 983
HpyF3I CTNAG 2 cut(s) 907, 1143
Hsp92II CATG 6 cut(s) 44, 132, 452, 488, 605, 722
LguI GCTCTTC 1 cut(s) 877
Lsp1109I GCAGC 5 cut(s) 253, 283, 343, 376, 1018
LweI GCATC 6 cut(s) 172, 205, 283, 316, 343, 376
MaeI CTAG 6 cut(s) 582, 636, 741, 753, 845, 867
MaeIII GTNAC 2 cut(s) 250, 1064
MflI RGATCY 5 cut(s) 578, 695, 812, 1126, 1154
MluCI AATT 8 cut(s) 746, 859, 896, 920, 958, 1038, 1089, 1138
MlyI GAGTC 1 cut(s) 1109
MseI TTAA 3 cut(s) 312, 923, 1088
MslI CAYNNNNRTG 4 cut(s) 120, 180, 291, 351
MspI CCGG 1 cut(s) 1215
MspR9I CCNGG 1 cut(s) 1272
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 1 cut(s) 1272
NdeI CATATG 1 cut(s) 1186
NlaIII CATG 6 cut(s) 44, 132, 452, 488, 605, 722
NlaIV GGNNCC 1 cut(s) 936
NmuCI GTSAC 1 cut(s) 1064
NspI RCATGY 4 cut(s) 132, 488, 605, 722
PciI ACATGT 3 cut(s) 484, 601, 718
PciSI GCTCTTC 1 cut(s) 877
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 1 cut(s) 1267
PfoI TCCNGGA 1 cut(s) 1270
PinAI ACCGGT 1 cut(s) 1214
PkrI GCNGC 5 cut(s) 268, 298, 358, 391, 1008
PleI GAGTC 1 cut(s) 1108
PpsI GAGTC 1 cut(s) 1108
PscI ACATGT 3 cut(s) 484, 601, 718
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 1270
PspGI CCWGG 1 cut(s) 1270
PspN4I GGNNCC 1 cut(s) 936
PspPI GGNCC 6 cut(s) 445, 562, 588, 679, 796, 903
PsuI RGATCY 5 cut(s) 578, 695, 812, 1126, 1154
RsaI GTAC 6 cut(s) 377, 460, 472, 632, 706, 823
RsaNI GTAC 6 cut(s) 376, 459, 471, 631, 705, 822
RseI CAYNNNNRTG 4 cut(s) 120, 180, 291, 351
SapI GCTCTTC 1 cut(s) 877
SaqAI TTAA 3 cut(s) 312, 923, 1088
SatI GCNGC 5 cut(s) 267, 297, 357, 390, 1007
Sau96I GGNCC 6 cut(s) 445, 562, 588, 679, 796, 903
SchI GAGTC 1 cut(s) 1109
ScrFI CCNGG 1 cut(s) 1272
SfaNI GCATC 6 cut(s) 172, 205, 283, 316, 343, 376
SfcI CTRYAG 4 cut(s) 454, 571, 688, 805
SinI GGWCC 5 cut(s) 445, 562, 588, 679, 796
SmiMI CAYNNNNRTG 4 cut(s) 120, 180, 291, 351
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 8 cut(s) 746, 859, 896, 920, 958, 1038, 1089, 1138
SspMI CTAG 6 cut(s) 582, 636, 741, 753, 845, 867
StyD4I CCNGG 1 cut(s) 1270
StyI CCWWGG 4 cut(s) 474, 591, 708, 825
TaaI ACNGT 2 cut(s) 104, 520
TaqI TCGA 1 cut(s) 36
TaqII GACCGA 1 cut(s) 813
TasI AATT 8 cut(s) 746, 859, 896, 920, 958, 1038, 1089, 1138
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 1 cut(s) 1267
Tru1I TTAA 3 cut(s) 312, 923, 1088
Tru9I TTAA 3 cut(s) 312, 923, 1088
TscAI CASTG 2 cut(s) 109, 523
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 5 cut(s) 266, 296, 356, 389, 1006
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 3 cut(s) 333, 852, 1209
TspRI CASTG 2 cut(s) 109, 523
VpaK11BI GGWCC 5 cut(s) 445, 562, 588, 679, 796
XapI RAATTY 3 cut(s) 746, 859, 958
XbaI TCTAGA 2 cut(s) 581, 844
XceI RCATGY 4 cut(s) 132, 488, 605, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XspI CTAG 6 cut(s) 582, 636, 741, 753, 845, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.