Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008861.1

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

6822 .. 8383

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008861.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgatagagctagaggatcaagcatatagcagatccagaagtaccaaggaacaacatgttgatcctgaaaagaatgatggagggtacactaggtataatgatgataggggaaatagagcttatgatagagaggaccgaagctatagtagatcccgaagtaccaaggaacaacattttgatctagaaaagaaagttagtggcatgacagagcctattcctgataaggaagggtctcgtttacaccatgctgatgcagactcaaatgcaagctgtaacagccagaggaattcacctagctcttattctcatctttcaaaagatcaatccaggccttcagtccaagcagaattaaagtatggggaacctaaagaaagagtaaggcaaaatttccttccctcaatagaggttgtagatgtttctggagttcttgaacagccttgtttgtataagctcaccaagagactaattgacaaggatgacagtaggttcggtgacttatcagttgagaggaatttaatttctgatgagtccaagccctccacttctcttatgaatctacctaataattctaagttgacaagatctactggggaaaactatgatagaaaaacatatggaagagtagtggtgtcaaggatatcggttcatcttgtgctgaaggaaagggaagttggcagttaccttccaagaagattccaggaagatagtgatgttttctcttcttcatcttctattaatgctggtcaagtacctagcaacttatactccaattttcatcgaccacacaatcattacaagagggctaatcgtcctaatgctggaccaatacatggtaatgccagcaaaggtgttccaaatcggccttctccactcgagagcaacttcactcatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.93

Weight (kDa)

8.87

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AclWI	GGATC	4 cut(s)	24, 27, 56, 144
AcsI	RAATTY	3 cut(s)	286, 385, 511
AcuI	CTGAAG	2 cut(s)	318, 677
AfaI	GTAC	4 cut(s)	43, 86, 160, 750
AfiI	CCNNNNNNNGG	2 cut(s)	818, 830
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	315, 431
AjnI	CCWGG	2 cut(s)	326, 696
AjuI	GAANNNNNNNTTGG	4 cut(s)	654, 686, 847, 879
AluBI	AGCT	6 cut(s)	10, 119, 141, 270, 297, 451
AluI	AGCT	6 cut(s)	10, 119, 141, 270, 297, 451
Alw26I	GTCTC	2 cut(s)	237, 454
AlwI	GGATC	4 cut(s)	24, 27, 56, 144
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	329, 860
ApoI	RAATTY	3 cut(s)	286, 385, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AseI	ATTAAT	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	133, 821
AsuHPI	GGTGA	3 cut(s)	282, 445, 503
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	133, 821
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	328, 698
BcoDI	GTCTC	2 cut(s)	237, 454
BfaI	CTAG	6 cut(s)	11, 90, 182, 294, 753, 895
BfmI	CTRYAG	1 cut(s)	142
BglII	AGATCT	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	328, 698
Bme18I	GGWCC	2 cut(s)	133, 821
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	133, 821
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	328, 698
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	45, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 830
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	328, 698
BseDI	CCNNGG	2 cut(s)	45, 162
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	818, 830
BseNI	ACTGG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	331, 862
BsiHKCI	CYCGRG	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	818, 830
BsmAI	GTCTC	2 cut(s)	237, 454
BsnI	GGCC	2 cut(s)	331, 862
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	872
Bsp143I	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
BspANI	GGCC	2 cut(s)	331, 862
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	4 cut(s)	24, 27, 56, 144
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	45, 162
BssMI	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
BssT1I	CCWWGG	2 cut(s)	45, 162
Bst2UI	CCWGG	2 cut(s)	328, 698
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	613, 724
BstC8I	GCNNGC	2 cut(s)	268, 841
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	7 cut(s)	19, 35, 64, 152, 181, 322, 584
BstMAI	GTCTC	2 cut(s)	237, 454
BstMBI	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	328, 698
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	326, 696
BstSFI	CTRYAG	1 cut(s)	142
BstX2I	RGATCY	3 cut(s)	32, 149, 581
BstYI	RGATCY	3 cut(s)	32, 149, 581
BsuRI	GGCC	2 cut(s)	331, 862
BtsCI	GGATG	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	268, 841
Cfr13I	GGNCC	2 cut(s)	133, 821
Csp6I	GTAC	4 cut(s)	42, 85, 159, 749
CviAII	CATG	4 cut(s)	56, 202, 245, 830
CviQI	GTAC	4 cut(s)	42, 85, 159, 749
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	7 cut(s)	18, 34, 63, 151, 180, 321, 583
DpnII	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
Eam1104I	CTCTTC	2 cut(s)	613, 724
EarI	CTCTTC	2 cut(s)	613, 724
Eco130I	CCWWGG	2 cut(s)	45, 162
Eco147I	AGGCCT	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	133, 821
Eco57I	CTGAAG	2 cut(s)	318, 677
Eco88I	CYCGRG	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	326, 696
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	45, 162
ErhI	CCWWGG	2 cut(s)	45, 162
FaeI	CATG	4 cut(s)	59, 205, 248, 833
FatI	CATG	4 cut(s)	55, 201, 244, 829
FauNDI	CATATG	1 cut(s)	613
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	6 cut(s)	11, 90, 182, 294, 753, 895
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	331, 862
Hin1II	CATG	4 cut(s)	59, 205, 248, 833
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	257, 527, 553, 693
HphI	GGTGA	3 cut(s)	282, 445, 503
Hpy166II	GTNNAC	3 cut(s)	87, 239, 576
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	8 cut(s)	36, 65, 153, 182, 218, 420, 428, 874
Hpy8I	GTNNAC	3 cut(s)	87, 239, 576
HpyAV	CCTTC	6 cut(s)	221, 342, 401, 652, 692, 873
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	2 cut(s)	254, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	59, 205, 248, 833
Kzo9I	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	6 cut(s)	11, 90, 182, 294, 753, 895
MaeIII	GTNAC	3 cut(s)	272, 491, 677
MalI	GATC	7 cut(s)	18, 34, 63, 151, 180, 321, 583
MboI	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
MboII	GAAGA	6 cut(s)	630, 702, 711, 713, 714, 720
MflI	RGATCY	3 cut(s)	32, 149, 581
MluCI	AATT	8 cut(s)	286, 347, 385, 465, 511, 516, 565, 769
MlyI	GAGTC	2 cut(s)	251, 536
MnlI	CCTC	9 cut(s)	7, 74, 124, 276, 397, 406, 501, 547, 792
MseI	TTAA	3 cut(s)	350, 515, 735
MslI	CAYNNNNRTG	2 cut(s)	249, 834
MspR9I	CCNGG	2 cut(s)	328, 698
MvaI	CCWGG	2 cut(s)	328, 698
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
NlaIII	CATG	4 cut(s)	59, 205, 248, 833
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	331
PciI	ACATGT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	553, 693
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	696
PleI	GAGTC	2 cut(s)	251, 535
PpsI	GAGTC	2 cut(s)	251, 535
PscI	ACATGT	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	326, 696
PspGI	CCWGG	2 cut(s)	326, 696
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	133, 821
PsuI	RGATCY	3 cut(s)	32, 149, 581
RsaI	GTAC	4 cut(s)	43, 86, 160, 750
RsaNI	GTAC	4 cut(s)	42, 85, 159, 749
RseI	CAYNNNNRTG	2 cut(s)	249, 834
SaqAI	TTAA	3 cut(s)	350, 515, 735
Sau3AI	GATC	7 cut(s)	16, 32, 61, 149, 178, 319, 581
Sau96I	GGNCC	2 cut(s)	133, 821
SchI	GAGTC	2 cut(s)	251, 536
ScrFI	CCNGG	2 cut(s)	328, 698
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	872
SinI	GGWCC	2 cut(s)	133, 821
SlaI	CTCGAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	2 cut(s)	249, 834
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	8 cut(s)	286, 347, 385, 465, 511, 516, 565, 769
SseBI	AGGCCT	1 cut(s)	331
SspMI	CTAG	6 cut(s)	11, 90, 182, 294, 753, 895
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	2 cut(s)	326, 696
StyI	CCWWGG	2 cut(s)	45, 162
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	778, 873
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	8 cut(s)	286, 347, 385, 465, 511, 516, 565, 769
TfiI	GAWTC	2 cut(s)	553, 693
Tru1I	TTAA	3 cut(s)	350, 515, 735
Tru9I	TTAA	3 cut(s)	350, 515, 735
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	4 cut(s)	566, 635, 714, 764
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	133, 821
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	3 cut(s)	286, 385, 511
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	872
XspI	CTAG	6 cut(s)	11, 90, 182, 294, 753, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.