Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Forward (+)

56920836 .. 56924710

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGTATGATTTTGGATGTAGAGATAGTAAATGGCTGCATCAAGGATAAGTCTCCTACTCTCCACAATGCATGGCAATCTGCTGCCAGCGGGCCTTGTTATCTGAGTGGGCTCTGCGACTTCCATTTTGCTGGTAGCACTGAGGAAAAGAAGTCACTTGATTCTAGGTCTGATCAGATAACCGTTTCAAAAGTGTCTGGTGAGGCATTTGAGAATGTGATGTCTCAGTCAATTGAGCCTGGGTCATTGATGAATTCATGTTTGCGCCTTATTCTAGAACTGAAAATCAGTTTCATGGATGATGGTCTTGGGAAGATAAAGGTTATTCCAGATCATTTTAAAGCATCCTCACCCAGTGTTGACTCTTCTCAAAATGATAGGTCCCATAGCTGGAGTCTAAGAAAATTAAGAACTGCTGCACACATGTTGAAGTCGTTTAGTCTGAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTTACTTGAAAGCTCAATTGGAACACGTTGATGAAATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGATTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGGTATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGCGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

329

Amino Acids

36.62

Weight (kDa)

4.84

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	204 - 312	6.9e-06	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	731
AciI	CCGC	3 cut(s)	90, 874, 923
AcsI	RAATTY	3 cut(s)	253, 588, 910
AdeI	CACNNNGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	623, 878
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflIII	ACRYGT	3 cut(s)	423, 577, 860
AgsI	TTSAA	5 cut(s)	189, 430, 562, 794, 910
AjiI	CACGTC	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	238, 649, 914
AjuI	GAANNNNNNNTTGG	4 cut(s)	554, 586, 902, 934
AluBI	AGCT	6 cut(s)	390, 493, 529, 554, 566, 813
AluI	AGCT	6 cut(s)	390, 493, 529, 554, 566, 813
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	3 cut(s)	57, 228, 611
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	36, 83, 416
ApoI	RAATTY	3 cut(s)	253, 588, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	92, 381, 720, 800
AsuHPI	GGTGA	3 cut(s)	212, 342, 488
AsuII	TTCGAA	2 cut(s)	520, 628
AvaII	GGWCC	3 cut(s)	381, 720, 800
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	3 cut(s)	23, 70, 403
BccI	CCATC	2 cut(s)	296, 467
BcgI	CGANNNNNNTGC	2 cut(s)	921, 955
BciT130I	CCWGG	3 cut(s)	240, 651, 916
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	3 cut(s)	57, 228, 611
BfaI	CTAG	6 cut(s)	165, 275, 465, 509, 633, 888
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	731
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	4 cut(s)	37, 84, 417, 924
BlsI	GCNGC	4 cut(s)	38, 85, 418, 925
Bme1390I	CCNGG	3 cut(s)	240, 651, 916
Bme18I	GGWCC	3 cut(s)	381, 720, 800
BmgBI	CACGTC	1 cut(s)	863
BmgT120I	GGNCC	4 cut(s)	92, 381, 720, 800
BmiI	GGNNCC	3 cut(s)	383, 721, 802
BmrFI	CCNGG	3 cut(s)	240, 651, 916
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	48, 353, 949
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	412
Bpu14I	TTCGAA	2 cut(s)	520, 628
BpuEI	CTTGAG	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	239, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	240, 651, 916
BseDI	CCNNGG	2 cut(s)	239, 455
BseGI	GGATG	4 cut(s)	22, 304, 344, 478
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	5 cut(s)	95, 132, 239, 434, 888
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	23, 70, 403
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	887
BslFI	GGGAC	3 cut(s)	367, 733, 786
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	3 cut(s)	57, 228, 611
BsmBI	CGTCTC	1 cut(s)	611
BsmFI	GGGAC	3 cut(s)	367, 733, 786
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	2 cut(s)	520, 628
Bsp1286I	GDGCHC	2 cut(s)	114, 887
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	172, 331, 751
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	3 cut(s)	90, 874, 923
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	5 cut(s)	96, 133, 238, 435, 889
BspLI	GGNNCC	3 cut(s)	383, 721, 802
BspMI	ACCTGC	1 cut(s)	731
BspT104I	TTCGAA	2 cut(s)	520, 628
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	239, 455
BssMI	GATC	3 cut(s)	172, 331, 751
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	3 cut(s)	240, 651, 916
Bst4CI	ACNGT	2 cut(s)	184, 906
Bst6I	CTCTTC	2 cut(s)	370, 537
BstAUI	TGTACA	1 cut(s)	621
BstBI	TTCGAA	2 cut(s)	520, 628
BstC8I	GCNNGC	3 cut(s)	88, 92, 531
BstDEI	CTNAG	7 cut(s)	104, 141, 225, 398, 443, 755, 897
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	4 cut(s)	22, 304, 344, 478
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	3 cut(s)	175, 334, 754
BstMAI	GTCTC	3 cut(s)	57, 228, 611
BstMBI	GATC	3 cut(s)	172, 331, 751
BstNI	CCWGG	3 cut(s)	240, 651, 916
BstNSI	RCATGY	2 cut(s)	427, 730
BstSCI	CCNGG	3 cut(s)	238, 649, 914
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	23, 70, 403
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	863
BtsCI	GGATG	4 cut(s)	22, 304, 344, 478
BtsIMutI	CAGTG	2 cut(s)	138, 361
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	88, 92, 531
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	4 cut(s)	92, 381, 720, 800
Csp6I	GTAC	2 cut(s)	622, 877
CviAII	CATG	7 cut(s)	72, 258, 295, 424, 456, 727, 981
CviQI	GTAC	2 cut(s)	622, 877
DdeI	CTNAG	7 cut(s)	104, 141, 225, 398, 443, 755, 897
DpnI	GATC	3 cut(s)	174, 333, 753
DpnII	GATC	3 cut(s)	172, 331, 751
DraI	TTTAAA	1 cut(s)	340
DraIII	CACNNNGTG	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	370, 537
EarI	CTCTTC	2 cut(s)	370, 537
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	3 cut(s)	381, 720, 800
EcoO109I	RGGNCCY	3 cut(s)	381, 720, 800
EcoRI	GAATTC	2 cut(s)	253, 910
EcoRII	CCWGG	3 cut(s)	238, 649, 914
EcoT14I	CCWWGG	1 cut(s)	455
EcoT22I	ATGCAT	2 cut(s)	73, 847
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	7 cut(s)	75, 261, 298, 427, 459, 730, 984
FaqI	GGGAC	3 cut(s)	367, 733, 786
FatI	CATG	7 cut(s)	71, 257, 294, 423, 455, 726, 980
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	4 cut(s)	37, 84, 417, 924
FokI	GGATG	4 cut(s)	29, 311, 331, 485
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	37, 84, 417, 924
FspBI	CTAG	6 cut(s)	165, 275, 465, 509, 633, 888
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	4 cut(s)	37, 84, 417, 924
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	75, 261, 298, 427, 459, 730, 984
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	2 cut(s)	552, 811
HinfI	GANTC	5 cut(s)	161, 362, 394, 512, 767
HphI	GGTGA	3 cut(s)	212, 342, 488
Hpy166II	GTNNAC	2 cut(s)	361, 639
Hpy188I	TCNGA	7 cut(s)	105, 172, 177, 444, 784, 898, 958
Hpy188III	TCNNGA	3 cut(s)	275, 329, 764
Hpy8I	GTNNAC	2 cut(s)	361, 639
HpyAV	CCTTC	1 cut(s)	824
HpyCH4III	ACNGT	2 cut(s)	184, 906
HpyCH4IV	ACGT	2 cut(s)	579, 862
HpyCH4V	TGCA	7 cut(s)	39, 71, 419, 715, 726, 845, 942
HpyF3I	CTNAG	7 cut(s)	104, 141, 225, 398, 443, 755, 897
HpySE526I	ACGT	2 cut(s)	579, 862
Hsp92II	CATG	7 cut(s)	75, 261, 298, 427, 459, 730, 984
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	172, 331, 751
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	3 cut(s)	23, 70, 403
LweI	GCATC	3 cut(s)	48, 353, 949
MaeI	CTAG	6 cut(s)	165, 275, 465, 509, 633, 888
MaeII	ACGT	2 cut(s)	579, 862
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	174, 333, 753
MboI	GATC	3 cut(s)	172, 331, 751
MboII	GAAGA	5 cut(s)	325, 357, 491, 554, 724
MfeI	CAATTG	2 cut(s)	231, 569
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	114, 887
MluCI	AATT	7 cut(s)	231, 253, 404, 569, 588, 910, 944
MlyI	GAGTC	3 cut(s)	356, 403, 761
MnlI	CCTC	8 cut(s)	136, 196, 358, 438, 540, 669, 672, 771
Mph1103I	ATGCAT	2 cut(s)	73, 847
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	3 cut(s)	339, 407, 857
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	240, 651, 916
MunI	CAATTG	2 cut(s)	231, 569
MvaI	CCWGG	3 cut(s)	240, 651, 916
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	3 cut(s)	172, 331, 751
NlaIII	CATG	7 cut(s)	75, 261, 298, 427, 459, 730, 984
NlaIV	GGNNCC	3 cut(s)	383, 721, 802
NmuCI	GTSAC	1 cut(s)	153
NsiI	ATGCAT	2 cut(s)	73, 847
NspI	RCATGY	2 cut(s)	427, 730
NspV	TTCGAA	2 cut(s)	520, 628
PciI	ACATGT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	161, 512
PkrI	GCNGC	4 cut(s)	38, 85, 418, 925
PleI	GAGTC	3 cut(s)	356, 402, 761
PpsI	GAGTC	3 cut(s)	356, 402, 761
PpuMI	RGGWCCY	3 cut(s)	381, 720, 800
PscI	ACATGT	1 cut(s)	423
Psp5II	RGGWCCY	3 cut(s)	381, 720, 800
Psp6I	CCWGG	3 cut(s)	238, 649, 914
PspGI	CCWGG	3 cut(s)	238, 649, 914
PspN4I	GGNNCC	3 cut(s)	383, 721, 802
PspPI	GGNCC	4 cut(s)	92, 381, 720, 800
PspPPI	RGGWCCY	3 cut(s)	381, 720, 800
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	2 cut(s)	623, 878
RsaNI	GTAC	2 cut(s)	622, 877
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	339, 407, 857
SatI	GCNGC	4 cut(s)	37, 84, 417, 924
Sau3AI	GATC	3 cut(s)	172, 331, 751
Sau96I	GGNCC	4 cut(s)	92, 381, 720, 800
SchI	GAGTC	3 cut(s)	356, 403, 761
ScrFI	CCNGG	3 cut(s)	240, 651, 916
SduI	GDGCHC	2 cut(s)	114, 887
SfaNI	GCATC	3 cut(s)	48, 353, 949
SfcI	CTRYAG	1 cut(s)	501
SfuI	TTCGAA	2 cut(s)	520, 628
SinI	GGWCC	3 cut(s)	381, 720, 800
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	7 cut(s)	231, 253, 404, 569, 588, 910, 944
SsiI	CCGC	3 cut(s)	90, 874, 923
SspMI	CTAG	6 cut(s)	165, 275, 465, 509, 633, 888
StyD4I	CCNGG	3 cut(s)	238, 649, 914
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	184, 906
TaiI	ACGT	2 cut(s)	582, 865
TaqI	TCGA	2 cut(s)	520, 628
TasI	AATT	7 cut(s)	231, 253, 404, 569, 588, 910, 944
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	2 cut(s)	161, 512
Tru1I	TTAA	3 cut(s)	339, 407, 857
Tru9I	TTAA	3 cut(s)	339, 407, 857
TscAI	CASTG	2 cut(s)	145, 361
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	3 cut(s)	36, 83, 416
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	5 cut(s)	246, 266, 283, 600, 843
TspGWI	ACGGA	2 cut(s)	485, 539
TspRI	CASTG	2 cut(s)	145, 361
VpaK11BI	GGWCC	3 cut(s)	381, 720, 800
XapI	RAATTY	3 cut(s)	253, 588, 910
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	2 cut(s)	427, 730
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	6 cut(s)	165, 275, 465, 509, 633, 888
Zsp2I	ATGCAT	2 cut(s)	73, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.