Rh7CG149000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001166
Physical Location & Seq
Reverse (-)
12183758 .. 12184216
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG149000.1

Sequence Viewer

Length: 459 bp
ATGTCCTTTTACAAAAAGCAAAGAGAAGAGATGAGGGCCATAACTCATCCCTTATTGATAGATGGACAACATACATCATTTTATAGTGCACAGAAACTGGATGTTGTTCCGATTTGTGACCGAGAGAATGACGTTGTGCCATTTTCATCTTTTAATGAGCTCAAACAAGGGCAATTTTTCCCAGCTTGTTCTGCCCCCCACAACAAGGTAGATGAATCTGCTCATGTACTCAGTTTGGAGAAATCATGTGAACCAAGTCCAAGGCAAGTCAATATGAGTATGATTTTGGATGTAGAGACAGTAAATGGCTGCATCAAGGATAATTCTCCTACTCTCCACAATGCTTCGCAATCTGCTGCCAGCGGGCCTTGTTATCTGAGTGGGCTTTGCGACTTCCATTTTGCTGGTAGCATTGAGGAAAAGAAAAGAAGTCACTTGATTCTAGGTCTGATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

5.94

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 363
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 160, 185
AluI AGCT 2 cut(s) 160, 185
Alw21I GWGCWC 2 cut(s) 91, 162
Alw26I GTCTC 1 cut(s) 290
Alw44I GTGCAC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 2 cut(s) 36, 365
ApaLI GTGCAC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 309, 356
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspS9I GGNCC 2 cut(s) 36, 365
BaeGI GKGCMC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 91, 162
BbvI GCAGC 2 cut(s) 296, 343
BccI CCATC 1 cut(s) 56
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 443
BisI GCNGC 2 cut(s) 310, 357
BlsI GCNGC 2 cut(s) 311, 358
BmgT120I GGNCC 2 cut(s) 36, 365
BmsI GCATC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 3 cut(s) 46, 106, 295
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 244, 368
BseNI ACTGG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 296, 343
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 2 cut(s) 38, 367
BsiHKAI GWGCWC 2 cut(s) 91, 162
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 38, 367
Bsp1286I GDGCHC 2 cut(s) 91, 162
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 1 cut(s) 363
BspANI GGCC 2 cut(s) 38, 367
BspCNI CTCAG 2 cut(s) 243, 369
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 361, 365
BstDEI CTNAG 2 cut(s) 230, 377
BstF5I GGATG 3 cut(s) 46, 106, 295
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 296, 343
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 2 cut(s) 38, 367
BtsCI GGATG 3 cut(s) 46, 106, 295
Cac8I GCNNGC 2 cut(s) 361, 365
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 36, 365
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 224, 246
CviJI RGCY 6 cut(s) 38, 160, 185, 309, 367, 385
CviKI_1 RGCY 6 cut(s) 38, 160, 185, 309, 367, 385
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 230, 377
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 227, 249
FaiI YATR 9 cut(s) 41, 72, 84, 225, 247, 275, 281, 455, 457
FatI CATG 2 cut(s) 223, 245
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 310, 357
FokI GGATG 3 cut(s) 33, 113, 302
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 310, 357
FspBI CTAG 1 cut(s) 443
GluI GCNGC 2 cut(s) 310, 357
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 38, 367
Hin1II CATG 2 cut(s) 227, 249
HinfI GANTC 2 cut(s) 215, 439
Hpy166II GTNNAC 2 cut(s) 89, 251
Hpy188I TCNGA 3 cut(s) 111, 378, 450
Hpy8I GTNNAC 2 cut(s) 89, 251
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 89, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 230, 377
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 227, 249
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 1 cut(s) 450
LpnPI CCDG 4 cut(s) 83, 195, 373, 390
Lsp1109I GCAGC 2 cut(s) 296, 343
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 116, 431
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 91, 162
MluCI AATT 2 cut(s) 173, 322
MnlI CCTC 2 cut(s) 27, 409
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 450
NlaIII CATG 2 cut(s) 227, 249
NmuCI GTSAC 2 cut(s) 116, 431
PfeI GAWTC 2 cut(s) 215, 439
PkrI GCNGC 2 cut(s) 311, 358
Psp124BI GAGCTC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 36, 365
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 310, 357
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 36, 365
SduI GDGCHC 2 cut(s) 91, 162
SetI ASST 5 cut(s) 135, 162, 187, 210, 448
SfaNI GCATC 1 cut(s) 321
Sse9I AATT 2 cut(s) 173, 322
SsiI CCGC 1 cut(s) 363
SspMI CTAG 1 cut(s) 443
SstI GAGCTC 1 cut(s) 162
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 135
TaqII GACCGA 1 cut(s) 135
TasI AATT 2 cut(s) 173, 322
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 215, 439
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 2 cut(s) 116, 431
TseI GCWGC 2 cut(s) 309, 356
Tsp45I GTSAC 2 cut(s) 116, 431
TspDTI ATGAA 2 cut(s) 135, 228
VneI GTGCAC 1 cut(s) 87
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.