Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008861.1

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

571 .. 2940

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaattcatgtttgcgccttattctagaactgaaaatcagcttcatggatgatggtcttgggaagataaaggttattccagatcattttaaagcatcctcacccagtgttgactcttctcaaaatgataggtcccatagctggagtctaggaaaattaagaactgctgcacacatgttgaagtcgtttagtctaagggggttgccatggggttctagcacggatggtgaagaaaaggttgagctatctgctgtagaactagagtcacttcgaacggagcttgctgatatagaagagagggaagctcacttgaaagctcaattggaacacgttgatgagattttacgatttgctcgtctctctggctatttgtacattcgaactaggtggacagcactaccaggagaacctcctccccttgatgatactgatgttgatgactggcttccacgctttgttgtcttgcaagggacctgcatgttcttctacttgttatccacagatctaagtcctcaagactccaccctattatctgatattgttgaaataggtcccttgccaagctttacacgagatgatgaaggaactcgatatgcattttatattttaacacgtcaaggactgcggtacgagtgctctagtgtttctgagatacagttgaattcctggttggcagcgttacgaactgactgcaaattggaaaagtctgatgccacaataccaaatggctcatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

245

Amino Acids

27.6

Weight (kDa)

4.89

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	4, 661
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	374, 629
AfiI	CCNNNNNNNGG	1 cut(s)	141
AflIII	ACRYGT	3 cut(s)	174, 328, 611
AgsI	TTSAA	4 cut(s)	181, 313, 545, 661
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	400, 665
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 653, 685
AluBI	AGCT	7 cut(s)	42, 141, 244, 280, 305, 317, 564
AluI	AGCT	7 cut(s)	42, 141, 244, 280, 305, 317, 564
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	167, 674
ApoI	RAATTY	2 cut(s)	4, 661
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	132, 471, 551
AsuHPI	GGTGA	2 cut(s)	93, 239
AsuII	TTCGAA	2 cut(s)	271, 379
AvaII	GGWCC	3 cut(s)	132, 471, 551
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BauI	CACGAG	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	2 cut(s)	154, 686
BccI	CCATC	2 cut(s)	47, 218
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BciT130I	CCWGG	2 cut(s)	402, 667
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	6 cut(s)	26, 149, 216, 260, 384, 639
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	2 cut(s)	168, 675
BlsI	GCNGC	2 cut(s)	169, 676
Bme1390I	CCNGG	2 cut(s)	402, 667
Bme18I	GGWCC	3 cut(s)	132, 471, 551
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	3 cut(s)	132, 471, 551
BmiI	GGNNCC	3 cut(s)	134, 472, 553
BmrFI	CCNGG	2 cut(s)	402, 667
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	104, 700
BmuI	ACTGGG	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	1 cut(s)	163
Bpu14I	TTCGAA	2 cut(s)	271, 379
BpuEI	CTTGAG	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	105, 446
BseBI	CCWGG	2 cut(s)	402, 667
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	3 cut(s)	55, 95, 229
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	105, 446
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	154, 686
BsgI	GTGCAG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	638
BslFI	GGGAC	3 cut(s)	118, 484, 537
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	362
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	3 cut(s)	118, 484, 537
Bsp119I	TTCGAA	2 cut(s)	271, 379
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	82, 502
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	1 cut(s)	625
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	134, 472, 553
BspMI	ACCTGC	1 cut(s)	482
BspT104I	TTCGAA	2 cut(s)	271, 379
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	105, 446
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	82, 502
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	2 cut(s)	402, 667
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	2 cut(s)	121, 288
BstAUI	TGTACA	1 cut(s)	372
BstBI	TTCGAA	2 cut(s)	271, 379
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	194, 506, 648
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	55, 95, 229
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	2 cut(s)	85, 505
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	82, 502
BstNI	CCWGG	2 cut(s)	402, 667
BstNSI	RCATGY	2 cut(s)	178, 481
BstSCI	CCNGG	2 cut(s)	400, 665
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	154, 686
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	55, 95, 229
BtsIMutI	CAGTG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	132, 471, 551
Csp6I	GTAC	2 cut(s)	373, 628
CviAII	CATG	6 cut(s)	9, 46, 175, 207, 478, 732
CviQI	GTAC	2 cut(s)	373, 628
DdeI	CTNAG	3 cut(s)	194, 506, 648
DpnI	GATC	2 cut(s)	84, 504
DpnII	GATC	2 cut(s)	82, 502
DraI	TTTAAA	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	121, 288
EarI	CTCTTC	2 cut(s)	121, 288
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	132, 471, 551
EcoO109I	RGGNCCY	3 cut(s)	132, 471, 551
EcoRI	GAATTC	2 cut(s)	4, 661
EcoRII	CCWGG	2 cut(s)	400, 665
EcoT14I	CCWWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	6 cut(s)	12, 49, 178, 210, 481, 735
FaqI	GGGAC	3 cut(s)	118, 484, 537
FatI	CATG	6 cut(s)	8, 45, 174, 206, 477, 731
Fnu4HI	GCNGC	2 cut(s)	168, 675
FokI	GGATG	3 cut(s)	62, 82, 236
Fsp4HI	GCNGC	2 cut(s)	168, 675
FspBI	CTAG	6 cut(s)	26, 149, 216, 260, 384, 639
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	168, 675
GsuI	CTGGAG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	6 cut(s)	12, 49, 178, 210, 481, 735
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	4 cut(s)	113, 145, 263, 518
HphI	GGTGA	2 cut(s)	93, 239
Hpy166II	GTNNAC	2 cut(s)	112, 390
Hpy188I	TCNGA	3 cut(s)	535, 649, 709
Hpy188III	TCNNGA	3 cut(s)	26, 80, 515
Hpy8I	GTNNAC	2 cut(s)	112, 390
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	2 cut(s)	330, 613
HpyCH4V	TGCA	5 cut(s)	170, 466, 477, 596, 693
HpyF3I	CTNAG	3 cut(s)	194, 506, 648
HpySE526I	ACGT	2 cut(s)	330, 613
Hsp92II	CATG	6 cut(s)	12, 49, 178, 210, 481, 735
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	82, 502
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	2 cut(s)	154, 686
LweI	GCATC	2 cut(s)	104, 700
MaeI	CTAG	6 cut(s)	26, 149, 216, 260, 384, 639
MaeII	ACGT	2 cut(s)	330, 613
MaeIII	GTNAC	2 cut(s)	264, 678
MalI	GATC	2 cut(s)	84, 504
MboI	GATC	2 cut(s)	82, 502
MboII	GAAGA	5 cut(s)	76, 108, 242, 305, 475
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	5 cut(s)	4, 155, 320, 661, 695
MlyI	GAGTC	4 cut(s)	107, 154, 272, 512
MnlI	CCTC	5 cut(s)	109, 291, 420, 423, 522
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	3 cut(s)	90, 158, 608
MslI	CAYNNNNRTG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	402, 667
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	402, 667
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	82, 502
NlaIII	CATG	6 cut(s)	12, 49, 178, 210, 481, 735
NlaIV	GGNNCC	3 cut(s)	134, 472, 553
NmuCI	GTSAC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	178, 481
NspV	TTCGAA	2 cut(s)	271, 379
PciI	ACATGT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	169, 676
PleI	GAGTC	4 cut(s)	107, 153, 271, 512
PpsI	GAGTC	4 cut(s)	107, 153, 271, 512
PpuMI	RGGWCCY	3 cut(s)	132, 471, 551
PscI	ACATGT	1 cut(s)	174
Psp5II	RGGWCCY	3 cut(s)	132, 471, 551
Psp6I	CCWGG	2 cut(s)	400, 665
PspGI	CCWGG	2 cut(s)	400, 665
PspN4I	GGNNCC	3 cut(s)	134, 472, 553
PspPI	GGNCC	3 cut(s)	132, 471, 551
PspPPI	RGGWCCY	3 cut(s)	132, 471, 551
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	2 cut(s)	374, 629
RsaNI	GTAC	2 cut(s)	373, 628
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	90, 158, 608
SatI	GCNGC	2 cut(s)	168, 675
Sau3AI	GATC	2 cut(s)	82, 502
Sau96I	GGNCC	3 cut(s)	132, 471, 551
SchI	GAGTC	4 cut(s)	107, 154, 272, 512
ScrFI	CCNGG	2 cut(s)	402, 667
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	2 cut(s)	104, 700
SfcI	CTRYAG	1 cut(s)	252
SfuI	TTCGAA	2 cut(s)	271, 379
SinI	GGWCC	3 cut(s)	132, 471, 551
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	5 cut(s)	4, 155, 320, 661, 695
SsiI	CCGC	1 cut(s)	625
SspMI	CTAG	6 cut(s)	26, 149, 216, 260, 384, 639
StyD4I	CCNGG	2 cut(s)	400, 665
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	2 cut(s)	333, 616
TaqI	TCGA	3 cut(s)	271, 379, 589
TasI	AATT	5 cut(s)	4, 155, 320, 661, 695
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	3 cut(s)	90, 158, 608
Tru9I	TTAA	3 cut(s)	90, 158, 608
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	2 cut(s)	167, 674
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	17, 34, 594
TspGWI	ACGGA	2 cut(s)	236, 290
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	3 cut(s)	132, 471, 551
XapI	RAATTY	2 cut(s)	4, 661
XbaI	TCTAGA	1 cut(s)	25
XceI	RCATGY	2 cut(s)	178, 481
XspI	CTAG	6 cut(s)	26, 149, 216, 260, 384, 639
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.