No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 219 |
| AccB1I | GGYRCC | 1 cut(s) | 1560 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 545, 2417, 2636, 2684 |
| AccII | CGCG | 2 cut(s) | 199, 3533 |
| AccIII | TCCGGA | 1 cut(s) | 3503 |
| AciI | CCGC | 9 cut(s) | 63, 197, 703, 1920, 2096, 2644, 3107, 3510, 3533 |
| AcoI | YGGCCR | 2 cut(s) | 2510, 2638 |
| AcsI | RAATTY | 5 cut(s) | 969, 1443, 2024, 2086, 2754 |
| AcuI | CTGAAG | 2 cut(s) | 2085, 2094 |
| AcyI | GRCGYC | 2 cut(s) | 60, 216 |
| AfaI | GTAC | 8 cut(s) | 476, 1408, 1415, 1570, 1845, 2071, 2712, 3667 |
| AjnI | CCWGG | 5 cut(s) | 1571, 2273, 2297, 3466, 3475 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2305, 2337, 3298, 3330 |
| AleI | CACNNNNGTG | 1 cut(s) | 1392 |
| Alw21I | GWGCWC | 3 cut(s) | 152, 243, 2287 |
| Alw26I | GTCTC | 4 cut(s) | 1811, 1873, 2052, 2099 |
| Ama87I | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| Aor13HI | TCCGGA | 1 cut(s) | 3503 |
| AoxI | GGCC | 5 cut(s) | 2318, 2510, 2638, 2674, 3201 |
| ApaI | GGGCCC | 1 cut(s) | 2678 |
| ApeKI | GCWGC | 3 cut(s) | 1922, 2092, 3193 |
| ApoI | RAATTY | 5 cut(s) | 969, 1443, 2024, 2086, 2754 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2486, 2518 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2339 |
| AspLEI | GCGC | 1 cut(s) | 3533 |
| AspS9I | GGNCC | 7 cut(s) | 1543, 2199, 2360, 2674, 2675, 3201, 3324 |
| AsuC2I | CCSGG | 4 cut(s) | 180, 2131, 2132, 2578 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaI | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| AvaII | GGWCC | 4 cut(s) | 1543, 2199, 2360, 3324 |
| AxyI | CCTNAGG | 2 cut(s) | 1317, 2486 |
| BaeGI | GKGCMC | 1 cut(s) | 2678 |
| BalI | TGGCCA | 1 cut(s) | 2640 |
| BanI | GGYRCC | 1 cut(s) | 1560 |
| BanII | GRGCYC | 2 cut(s) | 152, 2678 |
| BbsI | GAAGAC | 7 cut(s) | 199, 327, 699, 819, 855, 1359, 1848 |
| Bbv12I | GWGCWC | 3 cut(s) | 152, 243, 2287 |
| BbvCI | CCTCAGC | 2 cut(s) | 231, 465 |
| BbvI | GCAGC | 3 cut(s) | 1909, 2104, 3205 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 199, 227, 233, 261, 461, 495 |
| BciT130I | CCWGG | 5 cut(s) | 1573, 2275, 2299, 3468, 3477 |
| BciVI | GTATCC | 1 cut(s) | 3639 |
| BclI | TGATCA | 2 cut(s) | 2176, 3565 |
| BcnI | CCSGG | 4 cut(s) | 180, 2131, 2132, 2578 |
| BcoDI | GTCTC | 4 cut(s) | 1811, 1873, 2052, 2099 |
| BfaI | CTAG | 7 cut(s) | 1500, 1707, 1967, 2187, 2591, 2696, 3558 |
| BfmI | CTRYAG | 3 cut(s) | 1552, 2115, 2730 |
| BfuI | GTATCC | 1 cut(s) | 3639 |
| BisI | GCNGC | 5 cut(s) | 63, 1923, 2093, 2096, 3194 |
| BlsI | GCNGC | 5 cut(s) | 64, 1924, 2094, 2097, 3195 |
| BmcAI | AGTACT | 1 cut(s) | 1845 |
| Bme1390I | CCNGG | 9 cut(s) | 180, 1573, 2131, 2132, 2275, 2299, 2578, 3468, 3477 |
| Bme18I | GGWCC | 4 cut(s) | 1543, 2199, 2360, 3324 |
| BmeT110I | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| BmgT120I | GGNCC | 7 cut(s) | 1543, 2199, 2360, 2674, 2675, 3201, 3324 |
| BmiI | GGNNCC | 9 cut(s) | 297, 537, 1562, 2483, 2615, 2676, 2727, 2871, 3325 |
| BmrFI | CCNGG | 9 cut(s) | 180, 1573, 2131, 2132, 2275, 2299, 2578, 3468, 3477 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1488, 2823, 3432 |
| BpiI | GAAGAC | 7 cut(s) | 199, 327, 699, 819, 855, 1359, 1848 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3121, 3153 |
| BpmI | CTGGAG | 4 cut(s) | 2271, 2310, 2632, 3104 |
| Bpu10I | CCTNAGC | 3 cut(s) | 231, 465, 3485 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 4 cut(s) | 398, 638, 1732, 1770 |
| BpuMI | CCSGG | 4 cut(s) | 180, 2131, 2132, 2578 |
| Bsa29I | ATCGAT | 1 cut(s) | 2224 |
| BsaAI | YACGTR | 1 cut(s) | 1197 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2940 |
| BsaHI | GRCGYC | 2 cut(s) | 60, 216 |
| BsaJI | CCNNGG | 6 cut(s) | 178, 726, 1572, 1614, 2130, 2928 |
| BsaWI | WCCGGW | 1 cut(s) | 3503 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1047, 1077 |
| Bse1I | ACTGG | 7 cut(s) | 1735, 2288, 2327, 2384, 2615, 2800, 3495 |
| Bse21I | CCTNAGG | 2 cut(s) | 1317, 2486 |
| Bse3DI | GCAATG | 4 cut(s) | 217, 243, 477, 561 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2940 |
| BseAI | TCCGGA | 1 cut(s) | 3503 |
| BseBI | CCWGG | 5 cut(s) | 1573, 2275, 2299, 3468, 3477 |
| BseCI | ATCGAT | 1 cut(s) | 2224 |
| BseDI | CCNNGG | 6 cut(s) | 178, 726, 1572, 1614, 2130, 2928 |
| BseJI | GATNNNNATC | 1 cut(s) | 2940 |
| BseMI | GCAATG | 4 cut(s) | 217, 243, 477, 561 |
| BseMII | CTCAG | 7 cut(s) | 44, 222, 318, 456, 2500, 2546, 3476 |
| BseNI | ACTGG | 7 cut(s) | 1735, 2288, 2327, 2384, 2615, 2800, 3495 |
| BseRI | GAGGAG | 8 cut(s) | 104, 271, 409, 505, 626, 2050, 2529, 3101 |
| BseSI | GKGCMC | 1 cut(s) | 2678 |
| BseXI | GCAGC | 3 cut(s) | 1909, 2104, 3205 |
| BsgI | GTGCAG | 1 cut(s) | 1759 |
| Bsh1236I | CGCG | 2 cut(s) | 199, 3533 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2648 |
| BshFI | GGCC | 5 cut(s) | 2320, 2512, 2640, 2676, 3203 |
| BshNI | GGYRCC | 1 cut(s) | 1560 |
| BshVI | ATCGAT | 1 cut(s) | 2224 |
| BsiEI | CGRYCG | 1 cut(s) | 2648 |
| BsiHKAI | GWGCWC | 3 cut(s) | 152, 243, 2287 |
| BsiHKCI | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| BsiSI | CCGG | 4 cut(s) | 180, 2131, 2578, 3504 |
| BsmAI | GTCTC | 4 cut(s) | 1811, 1873, 2052, 2099 |
| BsnI | GGCC | 5 cut(s) | 2320, 2512, 2640, 2676, 3203 |
| BsoBI | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp120I | GGGCCC | 1 cut(s) | 2674 |
| Bsp1286I | GDGCHC | 4 cut(s) | 152, 243, 2287, 2678 |
| Bsp13I | TCCGGA | 1 cut(s) | 3503 |
| Bsp143I | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| Bsp19I | CCATGG | 1 cut(s) | 1614 |
| BspACI | CCGC | 9 cut(s) | 63, 197, 703, 1920, 2096, 2644, 3107, 3510, 3533 |
| BspANI | GGCC | 5 cut(s) | 2320, 2512, 2640, 2676, 3203 |
| BspCNI | CTCAG | 7 cut(s) | 43, 223, 319, 457, 2499, 2545, 3477 |
| BspDI | ATCGAT | 1 cut(s) | 2224 |
| BspEI | TCCGGA | 1 cut(s) | 3503 |
| BspFNI | CGCG | 2 cut(s) | 199, 3533 |
| BspLI | GGNNCC | 9 cut(s) | 297, 537, 1562, 2483, 2615, 2676, 2727, 2871, 3325 |
| BspMAI | CTGCAG | 1 cut(s) | 2734 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 1560 |
| BsrDI | GCAATG | 4 cut(s) | 217, 243, 477, 561 |
| BsrI | ACTGG | 7 cut(s) | 1735, 2288, 2327, 2384, 2615, 2800, 3495 |
| BssECI | CCNNGG | 6 cut(s) | 178, 726, 1572, 1614, 2130, 2928 |
| BssMI | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| BssNI | GRCGYC | 2 cut(s) | 60, 216 |
| BssT1I | CCWWGG | 3 cut(s) | 726, 1614, 2928 |
| Bst2UI | CCWGG | 5 cut(s) | 1573, 2275, 2299, 3468, 3477 |
| Bst4CI | ACNGT | 9 cut(s) | 818, 854, 1347, 1508, 1556, 1854, 2282, 2570, 2891 |
| Bst6I | CTCTTC | 5 cut(s) | 81, 138, 248, 256, 2158 |
| BstACI | GRCGYC | 2 cut(s) | 60, 216 |
| BstBAI | YACGTR | 1 cut(s) | 1197 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 7 cut(s) | 44, 723, 1313, 1374, 1742, 2642, 2730 |
| BstDSI | CCRYGG | 1 cut(s) | 1614 |
| BstEII | GGTNACC | 1 cut(s) | 3479 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2115 |
| BstFNI | CGCG | 2 cut(s) | 199, 3533 |
| BstHHI | GCGC | 1 cut(s) | 3533 |
| BstKTI | GATC | 5 cut(s) | 1387, 2179, 2812, 2944, 3568 |
| BstMAI | GTCTC | 4 cut(s) | 1811, 1873, 2052, 2099 |
| BstMBI | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| BstMCI | CGRYCG | 1 cut(s) | 2648 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 43, 48, 196, 382, 405, 2303, 3131, 3301, 3530 |
| BstNI | CCWGG | 5 cut(s) | 1573, 2275, 2299, 3468, 3477 |
| BstNSI | RCATGY | 2 cut(s) | 725, 1376 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1488, 2823, 3432 |
| BstPI | GGTNACC | 1 cut(s) | 3479 |
| BstSCI | CCNGG | 9 cut(s) | 178, 1571, 2129, 2130, 2273, 2297, 2576, 3466, 3475 |
| BstSFI | CTRYAG | 3 cut(s) | 1552, 2115, 2730 |
| BstSLI | GKGCMC | 1 cut(s) | 2678 |
| BstSNI | TACGTA | 1 cut(s) | 1197 |
| BstUI | CGCG | 2 cut(s) | 199, 3533 |
| BstV1I | GCAGC | 3 cut(s) | 1909, 2104, 3205 |
| BstV2I | GAAGAC | 7 cut(s) | 199, 327, 699, 819, 855, 1359, 1848 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2504 |
| Bsu15I | ATCGAT | 1 cut(s) | 2224 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1317, 2486 |
| BsuI | GTATCC | 1 cut(s) | 3639 |
| BsuRI | GGCC | 5 cut(s) | 2320, 2512, 2640, 2676, 3203 |
| BsuTUI | ATCGAT | 1 cut(s) | 2224 |
| BtgI | CCRYGG | 1 cut(s) | 1614 |
| BtgZI | GCGATG | 1 cut(s) | 3438 |
| BtsIMutI | CAGTG | 8 cut(s) | 324, 1352, 1513, 1742, 2575, 2807, 3502, 3636 |
| Cac8I | GCNNGC | 7 cut(s) | 44, 723, 1313, 1374, 1742, 2642, 2730 |
| CfoI | GCGC | 1 cut(s) | 3533 |
| Cfr13I | GGNCC | 7 cut(s) | 1543, 2199, 2360, 2674, 2675, 3201, 3324 |
| Cfr9I | CCCGGG | 1 cut(s) | 2130 |
| ClaI | ATCGAT | 1 cut(s) | 2224 |
| CseI | GACGC | 2 cut(s) | 68, 3413 |
| CsiI | ACCWGGT | 1 cut(s) | 3475 |
| Csp6I | GTAC | 8 cut(s) | 475, 1407, 1414, 1569, 1844, 2070, 2711, 3666 |
| CviQI | GTAC | 8 cut(s) | 475, 1407, 1414, 1569, 1844, 2070, 2711, 3666 |
| DpnI | GATC | 5 cut(s) | 1386, 2178, 2811, 2943, 3567 |
| DpnII | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| EaeI | YGGCCR | 2 cut(s) | 2510, 2638 |
| Eam1104I | CTCTTC | 5 cut(s) | 81, 138, 248, 256, 2158 |
| EarI | CTCTTC | 5 cut(s) | 81, 138, 248, 256, 2158 |
| Ecl136II | GAGCTC | 1 cut(s) | 150 |
| Eco105I | TACGTA | 1 cut(s) | 1197 |
| Eco130I | CCWWGG | 3 cut(s) | 726, 1614, 2928 |
| Eco24I | GRGCYC | 2 cut(s) | 152, 2678 |
| Eco32I | GATATC | 1 cut(s) | 2925 |
| Eco47I | GGWCC | 4 cut(s) | 1543, 2199, 2360, 3324 |
| Eco53kI | GAGCTC | 1 cut(s) | 150 |
| Eco57I | CTGAAG | 2 cut(s) | 2085, 2094 |
| Eco81I | CCTNAGG | 2 cut(s) | 1317, 2486 |
| Eco88I | CYCGRG | 3 cut(s) | 359, 2130, 3127 |
| Eco91I | GGTNACC | 1 cut(s) | 3479 |
| EcoICRI | GAGCTC | 1 cut(s) | 150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2115 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2674 |
| EcoO65I | GGTNACC | 1 cut(s) | 3479 |
| EcoRI | GAATTC | 1 cut(s) | 1443 |
| EcoRII | CCWGG | 5 cut(s) | 1571, 2273, 2297, 3466, 3475 |
| EcoRV | GATATC | 1 cut(s) | 2925 |
| EcoT14I | CCWWGG | 3 cut(s) | 726, 1614, 2928 |
| EcoT22I | ATGCAT | 2 cut(s) | 2394, 3454 |
| EcoT38I | GRGCYC | 2 cut(s) | 152, 2678 |
| ErhI | CCWWGG | 3 cut(s) | 726, 1614, 2928 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3096, 3128 |
| FauNDI | CATATG | 1 cut(s) | 2596 |
| FbaI | TGATCA | 2 cut(s) | 2176, 3565 |
| Fnu4HI | GCNGC | 5 cut(s) | 63, 1923, 2093, 2096, 3194 |
| FriOI | GRGCYC | 2 cut(s) | 152, 2678 |
| Fsp4HI | GCNGC | 5 cut(s) | 63, 1923, 2093, 2096, 3194 |
| FspBI | CTAG | 7 cut(s) | 1500, 1707, 1967, 2187, 2591, 2696, 3558 |
| GlaI | GCGC | 1 cut(s) | 3532 |
| GluI | GCNGC | 5 cut(s) | 63, 1923, 2093, 2096, 3194 |
| GsuI | CTGGAG | 4 cut(s) | 2271, 2310, 2632, 3104 |
| HaeIII | GGCC | 5 cut(s) | 2320, 2512, 2640, 2676, 3203 |
| HapII | CCGG | 4 cut(s) | 180, 2131, 2578, 3504 |
| HgaI | GACGC | 2 cut(s) | 68, 3413 |
| HhaI | GCGC | 1 cut(s) | 3533 |
| Hin1I | GRCGYC | 2 cut(s) | 60, 216 |
| Hin6I | GCGC | 1 cut(s) | 3531 |
| HinP1I | GCGC | 1 cut(s) | 3531 |
| HincII | GTYRAC | 2 cut(s) | 106, 655 |
| HindII | GTYRAC | 2 cut(s) | 106, 655 |
| HindIII | AAGCTT | 2 cut(s) | 2969, 3071 |
| HpaII | CCGG | 4 cut(s) | 180, 2131, 2578, 3504 |
| Hpy166II | GTNNAC | 9 cut(s) | 27, 106, 655, 1416, 1986, 2378, 2818, 3515, 3668 |
| Hpy8I | GTNNAC | 9 cut(s) | 27, 106, 655, 1416, 1986, 2378, 2818, 3515, 3668 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 221 |
| HpyCH4III | ACNGT | 9 cut(s) | 818, 854, 1347, 1508, 1556, 1854, 2282, 2570, 2891 |
| HpyCH4IV | ACGT | 2 cut(s) | 216, 1196 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 43, 48, 196, 382, 405, 2303, 3131, 3301, 3530 |
| HpySE526I | ACGT | 2 cut(s) | 216, 1196 |
| Hsp92I | GRCGYC | 2 cut(s) | 60, 216 |
| HspAI | GCGC | 1 cut(s) | 3531 |
| Kpn2I | TCCGGA | 1 cut(s) | 3503 |
| Ksp22I | TGATCA | 2 cut(s) | 2176, 3565 |
| Kzo9I | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| Lsp1109I | GCAGC | 3 cut(s) | 1909, 2104, 3205 |
| MabI | ACCWGGT | 1 cut(s) | 3475 |
| MaeI | CTAG | 7 cut(s) | 1500, 1707, 1967, 2187, 2591, 2696, 3558 |
| MaeII | ACGT | 2 cut(s) | 216, 1196 |
| MalI | GATC | 5 cut(s) | 1386, 2178, 2811, 2943, 3567 |
| MboI | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| MfeI | CAATTG | 4 cut(s) | 2180, 2631, 3430, 3615 |
| MhlI | GDGCHC | 4 cut(s) | 152, 243, 2287, 2678 |
| MlsI | TGGCCA | 1 cut(s) | 2640 |
| MluNI | TGGCCA | 1 cut(s) | 2640 |
| MlyI | GAGTC | 7 cut(s) | 22, 1769, 2833, 3052, 3389, 3494, 3635 |
| MmeI | TCCRAC | 5 cut(s) | 526, 2233, 2628, 2910, 3623 |
| Mox20I | TGGCCA | 1 cut(s) | 2640 |
| Mph1103I | ATGCAT | 2 cut(s) | 2394, 3454 |
| MroI | TCCGGA | 1 cut(s) | 3503 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2339 |
| MscI | TGGCCA | 1 cut(s) | 2640 |
| MseI | TTAA | 9 cut(s) | 504, 605, 837, 909, 1379, 1818, 2001, 2292, 2565 |
| MslI | CAYNNNNRTG | 8 cut(s) | 329, 1365, 1392, 1584, 1908, 2466, 2506, 2685 |
| Msp20I | TGGCCA | 1 cut(s) | 2640 |
| MspA1I | CMGCKG | 3 cut(s) | 464, 1922, 2644 |
| MspI | CCGG | 4 cut(s) | 180, 2131, 2578, 3504 |
| MspR9I | CCNGG | 9 cut(s) | 180, 1573, 2131, 2132, 2275, 2299, 2578, 3468, 3477 |
| MunI | CAATTG | 4 cut(s) | 2180, 2631, 3430, 3615 |
| MvaI | CCWGG | 5 cut(s) | 1573, 2275, 2299, 3468, 3477 |
| MvnI | CGCG | 2 cut(s) | 199, 3533 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 43, 48, 196, 382, 405, 2303, 3131, 3301, 3530 |
| NciI | CCSGG | 4 cut(s) | 180, 2131, 2132, 2578 |
| NcoI | CCATGG | 1 cut(s) | 1614 |
| NdeI | CATATG | 1 cut(s) | 2596 |
| NdeII | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| NlaIV | GGNNCC | 9 cut(s) | 297, 537, 1562, 2483, 2615, 2676, 2727, 2871, 3325 |
| NsiI | ATGCAT | 2 cut(s) | 2394, 3454 |
| NspI | RCATGY | 2 cut(s) | 725, 1376 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| OliI | CACNNNNGTG | 1 cut(s) | 1392 |
| PaeI | GCATGC | 2 cut(s) | 725, 1376 |
| PaeR7I | CTCGAG | 1 cut(s) | 3127 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2339 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 545, 2417, 2636, 2684 |
| PkrI | GCNGC | 5 cut(s) | 64, 1924, 2094, 2097, 3195 |
| PleI | GAGTC | 7 cut(s) | 22, 1769, 2832, 3051, 3388, 3494, 3634 |
| PpsI | GAGTC | 7 cut(s) | 22, 1769, 2832, 3051, 3388, 3494, 3634 |
| Ppu21I | YACGTR | 1 cut(s) | 1197 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1488, 2823, 3432 |
| Psp124BI | GAGCTC | 1 cut(s) | 152 |
| Psp6I | CCWGG | 5 cut(s) | 1571, 2273, 2297, 3466, 3475 |
| PspEI | GGTNACC | 1 cut(s) | 3479 |
| PspGI | CCWGG | 5 cut(s) | 1571, 2273, 2297, 3466, 3475 |
| PspN4I | GGNNCC | 9 cut(s) | 297, 537, 1562, 2483, 2615, 2676, 2727, 2871, 3325 |
| PspOMI | GGGCCC | 1 cut(s) | 2674 |
| PspPI | GGNCC | 7 cut(s) | 1543, 2199, 2360, 2674, 2675, 3201, 3324 |
| PspXI | VCTCGAGB | 1 cut(s) | 3127 |
| PstI | CTGCAG | 1 cut(s) | 2734 |
| PvuII | CAGCTG | 1 cut(s) | 464 |
| RsaI | GTAC | 8 cut(s) | 476, 1408, 1415, 1570, 1845, 2071, 2712, 3667 |
| RsaNI | GTAC | 8 cut(s) | 475, 1407, 1414, 1569, 1844, 2070, 2711, 3666 |
| RseI | CAYNNNNRTG | 8 cut(s) | 329, 1365, 1392, 1584, 1908, 2466, 2506, 2685 |
| SacI | GAGCTC | 1 cut(s) | 152 |
| SaqAI | TTAA | 9 cut(s) | 504, 605, 837, 909, 1379, 1818, 2001, 2292, 2565 |
| SatI | GCNGC | 5 cut(s) | 63, 1923, 2093, 2096, 3194 |
| Sau3AI | GATC | 5 cut(s) | 1384, 2176, 2809, 2941, 3565 |
| Sau96I | GGNCC | 7 cut(s) | 1543, 2199, 2360, 2674, 2675, 3201, 3324 |
| ScaI | AGTACT | 1 cut(s) | 1845 |
| SchI | GAGTC | 7 cut(s) | 22, 1769, 2833, 3052, 3389, 3494, 3635 |
| ScrFI | CCNGG | 9 cut(s) | 180, 1573, 2131, 2132, 2275, 2299, 2578, 3468, 3477 |
| SduI | GDGCHC | 4 cut(s) | 152, 243, 2287, 2678 |
| SexAI | ACCWGGT | 1 cut(s) | 3475 |
| SfcI | CTRYAG | 3 cut(s) | 1552, 2115, 2730 |
| Sfr274I | CTCGAG | 1 cut(s) | 3127 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SinI | GGWCC | 4 cut(s) | 1543, 2199, 2360, 3324 |
| SlaI | CTCGAG | 1 cut(s) | 3127 |
| SmaI | CCCGGG | 1 cut(s) | 2132 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 329, 1365, 1392, 1584, 1908, 2466, 2506, 2685 |
| SmlI | CTYRAG | 5 cut(s) | 377, 617, 1747, 1785, 3127 |
| SmoI | CTYRAG | 5 cut(s) | 377, 617, 1747, 1785, 3127 |
| SnaBI | TACGTA | 1 cut(s) | 1197 |
| SphI | GCATGC | 2 cut(s) | 725, 1376 |
| SsiI | CCGC | 9 cut(s) | 63, 197, 703, 1920, 2096, 2644, 3107, 3510, 3533 |
| SspI | AATATT | 1 cut(s) | 224 |
| SspMI | CTAG | 7 cut(s) | 1500, 1707, 1967, 2187, 2591, 2696, 3558 |
| SstI | GAGCTC | 1 cut(s) | 152 |
| StyD4I | CCNGG | 9 cut(s) | 178, 1571, 2129, 2130, 2273, 2297, 2576, 3466, 3475 |
| StyI | CCWWGG | 3 cut(s) | 726, 1614, 2928 |
| TaaI | ACNGT | 9 cut(s) | 818, 854, 1347, 1508, 1556, 1854, 2282, 2570, 2891 |
| TaiI | ACGT | 2 cut(s) | 219, 1199 |
| TaqI | TCGA | 9 cut(s) | 16, 219, 237, 251, 471, 1447, 2224, 3128, 3444 |
| TatI | WGTACW | 5 cut(s) | 474, 1413, 1843, 2710, 3665 |
| TauI | GCSGC | 2 cut(s) | 65, 2098 |
| Tru1I | TTAA | 9 cut(s) | 504, 605, 837, 909, 1379, 1818, 2001, 2292, 2565 |
| Tru9I | TTAA | 9 cut(s) | 504, 605, 837, 909, 1379, 1818, 2001, 2292, 2565 |
| TscAI | CASTG | 8 cut(s) | 331, 1352, 1513, 1742, 2575, 2807, 3502, 3636 |
| TseI | GCWGC | 3 cut(s) | 1922, 2092, 3193 |
| TspGWI | ACGGA | 6 cut(s) | 332, 581, 822, 858, 2342, 2385 |
| TspMI | CCCGGG | 1 cut(s) | 2130 |
| TspRI | CASTG | 8 cut(s) | 331, 1352, 1513, 1742, 2575, 2807, 3502, 3636 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 545, 2417, 2636, 2684 |
| VpaK11BI | GGWCC | 4 cut(s) | 1543, 2199, 2360, 3324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2115 |
| XapI | RAATTY | 5 cut(s) | 969, 1443, 2024, 2086, 2754 |
| XbaI | TCTAGA | 1 cut(s) | 2695 |
| XceI | RCATGY | 2 cut(s) | 725, 1376 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2550 |
| XhoI | CTCGAG | 1 cut(s) | 3127 |
| XmaI | CCCGGG | 1 cut(s) | 2130 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2339 |
| XspI | CTAG | 7 cut(s) | 1500, 1707, 1967, 2187, 2591, 2696, 3558 |
| ZraI | GACGTC | 1 cut(s) | 217 |
| ZrmI | AGTACT | 1 cut(s) | 1845 |
| Zsp2I | ATGCAT | 2 cut(s) | 2394, 3454 |