Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

12179498 .. 12182376

Gene Structure 2879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG148900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATGATGGTCTTGGGAAGATAAAGGTTATTCCAGATCATTTTAAAGCATCCTCACCCAGTGTTGACTCTTCTCAAAATGATAGGTCCCATAGCTGGAGTCTAGGAAAATTAAGAACTGCTGCACACATGTTGAAGTCGTTTAGTCTAAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACATGTTGATGAAATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGGTATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGTGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

230

Amino Acids

25.87

Weight (kDa)

4.8

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	105 - 214	8.5e-06	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
AciI	CCGC	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	294, 616
AdeI	CACNNNGTG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	329, 584
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	3 cut(s)	129, 283, 566
AgsI	TTSAA	4 cut(s)	136, 268, 500, 616
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	355, 620
AjuI	GAANNNNNNNTTGG	4 cut(s)	260, 292, 608, 640
AluBI	AGCT	6 cut(s)	96, 199, 235, 260, 272, 519
AluI	AGCT	6 cut(s)	96, 199, 235, 260, 272, 519
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	294, 616
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	87, 426, 506
AsuHPI	GGTGA	2 cut(s)	48, 194
AsuII	TTCGAA	2 cut(s)	226, 334
AvaII	GGWCC	3 cut(s)	87, 426, 506
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BauI	CACGAG	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	2, 173
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	2 cut(s)	357, 622
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	5 cut(s)	104, 171, 215, 339, 594
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	357, 622
Bme18I	GGWCC	3 cut(s)	87, 426, 506
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	87, 426, 506
BmiI	GGNNCC	3 cut(s)	89, 427, 508
BmrFI	CCNGG	2 cut(s)	357, 622
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	59, 655
BmuI	ACTGGG	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	1 cut(s)	118
Bpu14I	TTCGAA	2 cut(s)	226, 334
BpuEI	CTTGAG	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	60, 401
BseBI	CCWGG	2 cut(s)	357, 622
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	3 cut(s)	10, 50, 184
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	60, 401
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	593
BslFI	GGGAC	3 cut(s)	73, 439, 492
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	3 cut(s)	73, 439, 492
Bsp119I	TTCGAA	2 cut(s)	226, 334
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	37, 457
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	580
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	89, 427, 508
BspMI	ACCTGC	1 cut(s)	437
BspT104I	TTCGAA	2 cut(s)	226, 334
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	60, 401
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	37, 457
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	357, 622
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	76, 243
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	2 cut(s)	226, 334
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	149, 461, 603
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	10, 50, 184
BstKTI	GATC	2 cut(s)	40, 460
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	37, 457
BstNI	CCWGG	2 cut(s)	357, 622
BstNSI	RCATGY	3 cut(s)	133, 287, 436
BstSCI	CCNGG	2 cut(s)	355, 620
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	3 cut(s)	10, 50, 184
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	87, 426, 506
Csp6I	GTAC	2 cut(s)	328, 583
CviAII	CATG	5 cut(s)	130, 162, 284, 433, 687
CviJI	RGCY	9 cut(s)	96, 199, 235, 260, 272, 321, 400, 519, 684
CviKI_1	RGCY	9 cut(s)	96, 199, 235, 260, 272, 321, 400, 519, 684
CviQI	GTAC	2 cut(s)	328, 583
DdeI	CTNAG	3 cut(s)	149, 461, 603
DpnI	GATC	2 cut(s)	39, 459
DpnII	GATC	2 cut(s)	37, 457
DraI	TTTAAA	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	76, 243
EarI	CTCTTC	2 cut(s)	76, 243
Eco130I	CCWWGG	1 cut(s)	161
Eco47I	GGWCC	3 cut(s)	87, 426, 506
EcoO109I	RGGNCCY	3 cut(s)	87, 426, 506
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	355, 620
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	5 cut(s)	133, 165, 287, 436, 690
FaiI	YATR	9 cut(s)	93, 131, 163, 245, 285, 434, 549, 558, 688
FaqI	GGGAC	3 cut(s)	73, 439, 492
FatI	CATG	5 cut(s)	129, 161, 283, 432, 686
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	3 cut(s)	17, 37, 191
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	5 cut(s)	104, 171, 215, 339, 594
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	118
Hin1II	CATG	5 cut(s)	133, 165, 287, 436, 690
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	4 cut(s)	68, 100, 218, 473
HphI	GGTGA	2 cut(s)	48, 194
Hpy166II	GTNNAC	2 cut(s)	67, 345
Hpy188I	TCNGA	3 cut(s)	490, 604, 664
Hpy188III	TCNNGA	2 cut(s)	35, 470
Hpy8I	GTNNAC	2 cut(s)	67, 345
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	125, 421, 432, 551, 648
HpyF3I	CTNAG	3 cut(s)	149, 461, 603
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	5 cut(s)	133, 165, 287, 436, 690
Kzo9I	GATC	2 cut(s)	37, 457
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	59, 655
MaeI	CTAG	5 cut(s)	104, 171, 215, 339, 594
MaeII	ACGT	1 cut(s)	568
MalI	GATC	2 cut(s)	39, 459
MboI	GATC	2 cut(s)	37, 457
MboII	GAAGA	5 cut(s)	31, 63, 197, 260, 430
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	5 cut(s)	110, 275, 294, 616, 650
MlyI	GAGTC	3 cut(s)	62, 109, 467
MnlI	CCTC	5 cut(s)	64, 246, 375, 378, 477
Mph1103I	ATGCAT	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	3 cut(s)	45, 113, 563
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	357, 622
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	2 cut(s)	357, 622
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	37, 457
NlaIII	CATG	5 cut(s)	133, 165, 287, 436, 690
NlaIV	GGNNCC	3 cut(s)	89, 427, 508
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	3 cut(s)	133, 287, 436
NspV	TTCGAA	2 cut(s)	226, 334
PciI	ACATGT	2 cut(s)	129, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	3 cut(s)	62, 108, 467
PpsI	GAGTC	3 cut(s)	62, 108, 467
PpuMI	RGGWCCY	3 cut(s)	87, 426, 506
PscI	ACATGT	2 cut(s)	129, 283
Psp5II	RGGWCCY	3 cut(s)	87, 426, 506
Psp6I	CCWGG	2 cut(s)	355, 620
PspGI	CCWGG	2 cut(s)	355, 620
PspN4I	GGNNCC	3 cut(s)	89, 427, 508
PspPI	GGNCC	3 cut(s)	87, 426, 506
PspPPI	RGGWCCY	3 cut(s)	87, 426, 506
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	329, 584
RsaNI	GTAC	2 cut(s)	328, 583
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	45, 113, 563
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	37, 457
Sau96I	GGNCC	3 cut(s)	87, 426, 506
SchI	GAGTC	3 cut(s)	62, 109, 467
ScrFI	CCNGG	2 cut(s)	357, 622
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	2 cut(s)	59, 655
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	2 cut(s)	226, 334
SinI	GGWCC	3 cut(s)	87, 426, 506
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	5 cut(s)	110, 275, 294, 616, 650
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	5 cut(s)	104, 171, 215, 339, 594
StyD4I	CCNGG	2 cut(s)	355, 620
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	226, 334
TasI	AATT	5 cut(s)	110, 275, 294, 616, 650
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	45, 113, 563
Tru9I	TTAA	3 cut(s)	45, 113, 563
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	306, 549
TspGWI	ACGGA	2 cut(s)	191, 245
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	3 cut(s)	87, 426, 506
XapI	RAATTY	2 cut(s)	294, 616
XceI	RCATGY	3 cut(s)	133, 287, 436
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	5 cut(s)	104, 171, 215, 339, 594
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.