Rmu_sc0004154.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004154.1
OG0001166
Physical Location & Seq
Reverse (-)
20583 .. 20912
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004154.1_g000006.1.cds

Sequence Viewer

Length: 330 bp
atgacgaagagctctaggacgatgtcgtctcggaagcagagcaagcacagttcaagcaactcggactcggaggtagaaatagttgatgacgatgaaagagaagggaggacaaggaaggccaagaagtgtaaagaggagagttccgtcaaggtttcttacgctggcgagaagcaaagattgggagatggcggcgataatctgtctcgccatggaaatgacagtgaggatttagatgaggccgagcaaatttcttcgaagaggagaagagagagtgagaagaagaagaagaaaaagaaggaaaaaattgttgacactggtaatgtgacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

9.32

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 246
AgsI TTSAA 1 cut(s) 54
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 33, 207
AoxI GGCC 2 cut(s) 117, 237
ApoI RAATTY 1 cut(s) 246
AsuII TTCGAA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 33, 207
BfaI CTAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 149, 274
BshFI GGCC 2 cut(s) 119, 239
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 33, 207
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 2 cut(s) 119, 239
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 119, 239
BspQI GCTCTTC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 254
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 50, 221
Bst6I CTCTTC 3 cut(s) 2, 251, 259
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 44, 163
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 208
BstMAI GTCTC 2 cut(s) 33, 207
BstMWI GCNNNNNNNGC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 119, 239
BtgI CCRYGG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 226, 312
Cac8I GCNNGC 2 cut(s) 44, 163
CviAII CATG 1 cut(s) 209
CviJI RGCY 3 cut(s) 12, 119, 239
CviKI_1 RGCY 3 cut(s) 12, 119, 239
DdeI CTNAG 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 3 cut(s) 2, 251, 259
EarI CTCTTC 3 cut(s) 2, 251, 259
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 2 cut(s) 119, 239
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 33, 64, 70
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 3 cut(s) 95, 109, 289
HpyCH4III ACNGT 2 cut(s) 50, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 2 cut(s) 147, 300
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 8 cut(s) 19, 243, 268, 276, 289, 292, 295, 298
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 246, 303
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 64, 99, 127, 217, 229, 252
MslI CAYNNNNRTG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 208
NlaIII CATG 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 322
NspV TTCGAA 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 2
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 1 cut(s) 190
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 14, 75, 153
SfuI TTCGAA 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 2 cut(s) 246, 303
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 14
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 50, 221
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 246, 303
TauI GCSGC 1 cut(s) 192
TscAI CASTG 2 cut(s) 226, 319
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 226, 319
Tth111I GACNNNGTC 1 cut(s) 22
XapI RAATTY 1 cut(s) 246
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.