Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

12165992 .. 12170024

Gene Structure 4033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG148800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGCTCTCAGCTTTTCAGATCCGCTTCCAGAGCTGCCAGGTCCTTCCTCTCTGCTCCCAAGACCTCTCGCTTCTTCTCCGAAGGACAAGCTGTAGCTACTGCAGCAGCAGTAACCTTACGTGGAAAGGTGCCTGCCTTTGCTTCCAATTTTGGAAGAGCTGGTTCTGAAAATGCATCTTGGGTTTCAGCAGCCCTCGCTGTTCCTGCTGCAGCTTACATGCTCCTGGACCAGGAGGTTCATGCTGCAGAGTATGAGCGCACTTTCATTGCTATCAAGCCAGACGGAGTTCAAAGAGGACTGATTTCAGAAATCATAGCTCGATTTGAGAGGAAGGGTTTCAAACTTGTAGGCATTAAAGTAGTTGTTCCTTCAAAGGATTTCGCACAGAAGCATTATCATGATCTAAAGGAAAGACCATTTTTCAGTGGCCTTTGCGACTTCCTTAGCTCTGGACCTGTGATTGCTATGGTTAGTACAACTAAAGTTCATCTATTCTTTTGGTCTGAACTTGATTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

174

Amino Acids

18.97

Weight (kDa)

9.67

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	86 - 161	1.4e-26	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	293, 343, 375
AjnI	CCWGG	3 cut(s)	38, 225, 231
AluBI	AGCT	9 cut(s)	6, 13, 35, 92, 98, 161, 215, 320, 450
AluI	AGCT	9 cut(s)	6, 13, 35, 92, 98, 161, 215, 320, 450
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	7 cut(s)	35, 104, 107, 191, 209, 212, 245
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	42, 229, 455
AvaII	GGWCC	3 cut(s)	42, 229, 455
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BciT130I	CCWGG	3 cut(s)	40, 227, 233
BfmI	CTRYAG	4 cut(s)	93, 102, 210, 246
BisI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
BlsI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
Bme1390I	CCNGG	3 cut(s)	40, 227, 233
Bme18I	GGWCC	3 cut(s)	42, 229, 455
BmgT120I	GGNCC	3 cut(s)	42, 229, 455
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	3 cut(s)	40, 227, 233
BmsI	GCATC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	40, 227, 233
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	20, 403
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	3 cut(s)	106, 214, 250
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	2 cut(s)	20, 403
Bst2UI	CCWGG	3 cut(s)	40, 227, 233
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	9, 446
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	23, 406
BstMBI	GATC	2 cut(s)	20, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 104, 197, 206
BstNI	CCWGG	3 cut(s)	40, 227, 233
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	38, 225, 231
BstSFI	CTRYAG	4 cut(s)	93, 102, 210, 246
BstV1I	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	42, 229, 455
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	3 cut(s)	220, 242, 401
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	2 cut(s)	9, 446
DpnI	GATC	2 cut(s)	22, 405
DpnII	GATC	2 cut(s)	20, 403
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	42, 229, 455
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	3 cut(s)	38, 225, 231
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	223, 245, 404
FaiI	YATR	6 cut(s)	221, 243, 255, 317, 402, 470
FatI	CATG	3 cut(s)	219, 241, 400
Fnu4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
HaeIII	GGCC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	223, 245, 404
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	515
Hpy188I	TCNGA	5 cut(s)	20, 82, 169, 310, 508
Hpy188III	TCNNGA	3 cut(s)	30, 401, 453
HpyAV	CCTTC	4 cut(s)	55, 77, 328, 381
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	104, 176, 212, 248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 104, 197, 206
HpyF3I	CTNAG	2 cut(s)	9, 446
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	223, 245, 404
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	20, 403
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	61, 228
Lsp1109I	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	22, 405
MboI	GATC	2 cut(s)	20, 403
MboII	GAAGA	2 cut(s)	67, 168
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	6 cut(s)	59, 76, 206, 229, 290, 324
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	357, 523
MslI	CAYNNNNRTG	1 cut(s)	399
MspR9I	CCNGG	3 cut(s)	40, 227, 233
MvaI	CCWGG	3 cut(s)	40, 227, 233
MwoI	GCNNNNNNNGC	4 cut(s)	32, 104, 197, 206
NdeII	GATC	2 cut(s)	20, 403
NlaIII	CATG	3 cut(s)	223, 245, 404
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	223
PagI	TCATGA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
Ppu21I	YACGTR	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	3 cut(s)	38, 225, 231
PspGI	CCWGG	3 cut(s)	38, 225, 231
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	42, 229, 455
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	3 cut(s)	106, 214, 250
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	357, 523
SatI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
Sau3AI	GATC	2 cut(s)	20, 403
Sau96I	GGNCC	3 cut(s)	42, 229, 455
ScrFI	CCNGG	3 cut(s)	40, 227, 233
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	4 cut(s)	93, 102, 210, 246
SinI	GGWCC	3 cut(s)	42, 229, 455
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	38, 225, 231
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	322
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	2 cut(s)	357, 523
Tru9I	TTAA	2 cut(s)	357, 523
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	7 cut(s)	35, 104, 107, 191, 209, 212, 245
TspDTI	ATGAA	4 cut(s)	230, 256, 479, 507
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	42, 229, 455
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.