Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

36378774 .. 36388463

Gene Structure 9690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTACTTTCAAACTAGGTGGAAAACACTACCAAGAGAACCTCCTCCACTTGATGATACTGATGTTGATGATTGGCTTCCATGCGTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCTACAGAATTCTTCCCCTTTGCATTTGTAATAGTAGATTTCAAAAATCATGTGAACTTGGATATTGAAGCCTCCATTGACCAAGAGATCATTCGGCGAACCAAGAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

79

Amino Acids

9.4

Weight (kDa)

4.68

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	11, 169, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	113
BssMI	GATC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	3 cut(s)	81, 109, 176
CviJI	RGCY	2 cut(s)	76, 197
CviKI_1	RGCY	2 cut(s)	76, 197
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	84, 112, 179
FaiI	YATR	3 cut(s)	82, 110, 177
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	80, 108, 175
FspBI	CTAG	1 cut(s)	15
Hin1II	CATG	3 cut(s)	84, 112, 179
Hpy166II	GTNNAC	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	97, 108, 149
Hsp92II	CATG	3 cut(s)	84, 112, 179
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	1 cut(s)	118
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	106, 130
MluCI	AATT	1 cut(s)	134
MnlI	CCTC	3 cut(s)	51, 54, 208
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	3 cut(s)	84, 112, 179
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	102
PspPPI	RGGWCCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	102
SetI	ASST	3 cut(s)	20, 43, 107
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	134
SspMI	CTAG	1 cut(s)	15
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	3
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	112
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.