Rh7CG149200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001166
Physical Location & Seq
Reverse (-)
12191976 .. 12192299
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG149200.1

Sequence Viewer

Length: 324 bp
ATGACGAAGAGCTCTAGGACGACGTCGTCTCGGAAGCAAAGCAAGCAGAGTTCAAGCAACTCGTACTCGGAGGTAGAAATAGTTGATGACGATGAAAGAGAAGGGAGGACAAGGAAGGCCAAGAACTGTAAAGAGGAGAGTTCCATCAGGGTTTCTTACCCTGGTGAGAAGCGAAGATTGGGAGACCGTGGCGATAATCCGTCTCGCCATGGAAATGACAGTGAGGATTTAGTTGATGCCGAGCAAATTTCTTCAAAGAGGAGAAGAGAGAGTGAGAAGAAGAAAATGAAGGAAAAAATTGCTGACACTGGTAATGTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.18

Weight (kDa)

9.44

Isoelectric Point (pI)

74.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AatII GACGTC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 2 cut(s) 54, 255
AjnI CCWGG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 3 cut(s) 33, 177, 207
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 33, 177, 207
BfaI CTAG 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 160, 187, 208
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 3 cut(s) 160, 187, 208
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 149, 274
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 3 cut(s) 33, 177, 207
BsmBI CGTCTC 2 cut(s) 33, 207
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 208
BspANI GGCC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 160, 187, 208
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 128, 188, 221
Bst6I CTCTTC 2 cut(s) 2, 259
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 2 cut(s) 187, 208
BstMAI GTCTC 3 cut(s) 33, 177, 207
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 2 cut(s) 187, 208
BtsIMutI CAGTG 2 cut(s) 226, 306
Cac8I GCNNGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 209
CviJI RGCY 2 cut(s) 12, 119
CviKI_1 RGCY 2 cut(s) 12, 119
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 2, 259
EarI CTCTTC 2 cut(s) 2, 259
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 2 cut(s) 33, 207
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FatI CATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 14
FspBI CTAG 1 cut(s) 15
HaeIII GGCC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 212
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 33, 70
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 3 cut(s) 95, 109, 283
HpyCH4III ACNGT 3 cut(s) 128, 188, 221
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 4 cut(s) 133, 147, 174, 294
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 316
MboII GAAGA 6 cut(s) 19, 186, 243, 276, 289, 292
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 246, 297
MnlI CCTC 5 cut(s) 64, 99, 127, 217, 252
MslI CAYNNNNRTG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 208
NlaIII CATG 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 2
PflFI GACNNNGTC 2 cut(s) 22, 25
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PsyI GACNNNGTC 2 cut(s) 22, 25
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 14, 26, 75
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 2 cut(s) 246, 297
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 128, 188, 221
TaiI ACGT 1 cut(s) 26
TasI AATT 2 cut(s) 246, 297
TscAI CASTG 2 cut(s) 226, 313
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 108, 302
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 226, 313
Tth111I GACNNNGTC 2 cut(s) 22, 25
XapI RAATTY 1 cut(s) 246
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.