Rw7G012400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001166
Physical Location & Seq
Reverse (-)
11703893 .. 11708698
4806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012400.1

Sequence Viewer

Length: 2046 bp
ATGTCGTCTCGGAAGCAGAGCAAGCACAGTTCAAGCAACTCGGACTCGGAGGTAGAAATAGTCGATGACGATGAAAGAGAAGGGAGGACAAGGAAGGCCAAGAAGTGTAAAGAGGAGAGTTCCGTCAAGGTTTCTTACGCTGGCGAGAAGCAAAGATTGGGAGACGGCGGCGATAATCTGTCTCGCCATGGAAATGACAGTGAGGATTTAGATGAGGCCGAGCAAATTTCTTTGAAGAGGAGAAGAGAGAGTGAGAAGAAGAAGAAGAAAAAGAAGGAAAAAATTGCTGACACTGGAGGAGCAGAGATGGGGTCTGTTGAGAAGTGTGAATATCAGGAGTGTGTAAGAGATGAGAAGGATAGTAGGCGGTCAACAAGAAGCGAGCATGACAAGGATAGATACAAGGATGGTGCAAGTAATAAAGTCAAGTATGGAGAAGACATTGACAGTGATATGAGGCACAAGGATGGTGCATGTAATAAAGTCAACTATGGAGAAGACACTGACACAGATACGCCCAAGAATGCTACAAGTTATATTAGTAAGTATGGAGAAGATTCTAATAGGGACAAGGATGGTGCAAGTTATAAAGTTACTCATAGAGAAGCTGCTAACAGAGATAGTAGGCACAAGGATGCTGCAAGATGTAAAGTTAAGTATGAAGAAGATGCTGACAAAGATAGTAGGCACAAGGATGTTGCAAGATATAAAGCCAAGTACGAAGAAGATGCTGCCAGAGATAGTAGGCACAAGGATGATGCAAATTATGAGGTTAAGTATGGAGAAGATGCTGATGGAGATAGTAGGCACAGGGATCGCAAGTCGGGTAGTAAGCATGCAAAGGATGAAATTTATGCCATTGAAAGTTGGTACAAGAAATCAAGATATGATGATGGAAAACAGACTAGGTATAATGATGATAGGGGAAGTAGAGGTGATGATAGAGTGGACCATGACTATAGTACATCCCGAAGTACCAAGGAACGACATGTTGATCCAATAAACAATAATGGAGGAGACACTGTGTATAATAATGATAGGAGAAATAGAGCTAATGATAGAGAGGACCAAGCTTATAGCAGATCCAGAAGTACCAAGGAACAACATGTTGATCCTGAAAAGAATGATGGAGGGTACACTAGGTATAAGGATGATAGGGGAAATAGTGCTGATGATAGAGAGGACCAAAACTATAGCAGATCCCGAAGTACCAAGGAACGACATGTTGATCCAGAAAAGAATGCTGGAGAATTCACTAGGTATAATGATGATAGGGGAAATAGAGCTTATGATAGAGAGGACCGAAGCTATAGTAGATCCCGAAGTACCAAGGAACAACATTTTGATCTAGAAAAGAAAGTCAGTGGCATGGCAGAGCCTATTGCTGATAAGGAAGGGCCCTCAGTCCAAGCAGAATTAAAGTATGGGGAACCTGAAGAAAGAATAAGGCAAAATTTCCTTCCTTCAATAGAGGTTGTAGATGTTTCTGGAGTTCTTGAGCAGCCTTGTTTGTATAAGCTCACCAAGAGACTAATTGGCAAGGATGACAGTAGTTTCGGTGACTTATCAATTGAGAGGGATTTAATTTATGATGAGTCCAAGCCCTCCACTTCTCTTTTGGATCTACCTAATAATTCTAAGAAAGGAAAGTTGGCAGTTGCCTTCCAAGAAGATTCCAGGAAGATAGTGATGTTTTCTCTTCTTCATCTTCTATTAATGCTGGTCAAGTACCTAGCAACTCATAGTCCAATTTTCATCGACTACACAATCATTAAAAGAGGGCTAATCGTCCTAATGCTGGACCAGTGCATGTTTCCTGCTTTTCCTATGTATAGTGCAATACTTGTGATGGATATAAATAACTCTGCATTTTCTCATCATGTCCTTAATGCTGGCAGATACTTCAGCCATGGGCATCAATATGGGTGGCAAATTCCTGTTGATAATAGTTCATACCCCTCATTGCCTGCGCGAGATGCAAATAATGTTGCCACCAGGTCTGAGGCTCCAGCATATAGGACGTTTGATTGGAACTACAATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

681

Amino Acids

78.35

Weight (kDa)

6.36

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AccII CGCG 1 cut(s) 1972
AciI CCGC 2 cut(s) 168, 367
AclWI GGATC 8 cut(s) 822, 989, 1077, 1106, 1194, 1223, 1311, 1629
AcsI RAATTY 5 cut(s) 225, 849, 1250, 1453, 1932
AcuI CTGAAG 2 cut(s) 1455, 1888
AfaI GTAC 9 cut(s) 719, 872, 964, 976, 1093, 1136, 1210, 1327, 1730
AfiI CCNNNNNNNGG 1 cut(s) 1798
AflIII ACRYGT 3 cut(s) 988, 1105, 1222
AgsI TTSAA 4 cut(s) 33, 235, 863, 1467
AjnI CCWGG 2 cut(s) 1676, 1994
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 1634, 1666
AluBI AGCT 6 cut(s) 608, 1052, 1073, 1286, 1308, 1519
AluI AGCT 6 cut(s) 608, 1052, 1073, 1286, 1308, 1519
Alw26I GTCTC 5 cut(s) 12, 156, 186, 1011, 1522
AlwI GGATC 8 cut(s) 822, 989, 1077, 1106, 1194, 1223, 1311, 1629
AoxI GGCC 3 cut(s) 96, 216, 1397
ApaI GGGCCC 1 cut(s) 1401
ApeKI GCWGC 4 cut(s) 608, 638, 731, 1501
ApoI RAATTY 5 cut(s) 225, 849, 1250, 1453, 1932
ArsI GACNNNNNNTTYG 2 cut(s) 1538, 1570
AseI ATTAAT 1 cut(s) 1715
AspLEI GCGC 1 cut(s) 1972
AspS9I GGNCC 7 cut(s) 949, 1066, 1183, 1300, 1397, 1398, 1801
AsuHPI GGTGA 3 cut(s) 947, 1513, 1571
AvaII GGWCC 5 cut(s) 949, 1066, 1183, 1300, 1801
BaeGI GKGCMC 1 cut(s) 1401
BanII GRGCYC 1 cut(s) 1401
BbsI GAAGAC 2 cut(s) 444, 504
BbvI GCAGC 4 cut(s) 595, 625, 718, 1513
BccI CCATC 8 cut(s) 301, 401, 461, 569, 788, 887, 1121, 1843
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 4 cut(s) 710, 744, 797, 831
BciT130I CCWGG 2 cut(s) 1678, 1996
BcoDI GTCTC 5 cut(s) 12, 156, 186, 1011, 1522
BfaI CTAG 5 cut(s) 906, 1140, 1257, 1349, 1733
BfmI CTRYAG 3 cut(s) 958, 1192, 1309
BisI GCNGC 5 cut(s) 169, 609, 639, 732, 1502
BlsI GCNGC 5 cut(s) 170, 610, 640, 733, 1503
Bme1390I CCNGG 2 cut(s) 1678, 1996
Bme18I GGWCC 5 cut(s) 949, 1066, 1183, 1300, 1801
BmgT120I GGNCC 7 cut(s) 949, 1066, 1183, 1300, 1397, 1398, 1801
BmiI GGNNCC 3 cut(s) 1399, 1431, 2007
BmrFI CCNGG 2 cut(s) 1678, 1996
BmsI GCATC 7 cut(s) 625, 658, 718, 748, 778, 1924, 1966
BpiI GAAGAC 2 cut(s) 444, 504
BpmI CTGGAG 4 cut(s) 315, 1266, 1509, 1992
BpuEI CTTGAG 1 cut(s) 1517
BsaJI CCNNGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 1 cut(s) 1798
Bse1I ACTGG 2 cut(s) 298, 1804
Bse3DI GCAATG 1 cut(s) 1961
BseBI CCWGG 2 cut(s) 1678, 1996
BseDI CCNNGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
BseLI CCNNNNNNNGG 1 cut(s) 1798
BseMI GCAATG 1 cut(s) 1961
BseMII CTCAG 2 cut(s) 1416, 1992
BseNI ACTGG 2 cut(s) 298, 1804
BseRI GAGGAG 4 cut(s) 128, 253, 312, 1029
BseSI GKGCMC 1 cut(s) 1401
BseXI GCAGC 4 cut(s) 595, 625, 718, 1513
Bsh1236I CGCG 1 cut(s) 1972
BshFI GGCC 3 cut(s) 98, 218, 1399
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 1798
BsmAI GTCTC 5 cut(s) 12, 156, 186, 1011, 1522
BsmBI CGTCTC 2 cut(s) 12, 156
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 2 cut(s) 529, 1246
BsnI GGCC 3 cut(s) 98, 218, 1399
Bsp120I GGGCCC 1 cut(s) 1397
Bsp1286I GDGCHC 1 cut(s) 1401
Bsp143I GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
Bsp19I CCATGG 2 cut(s) 187, 1909
BspACI CCGC 2 cut(s) 168, 367
BspANI GGCC 3 cut(s) 98, 218, 1399
BspCNI CTCAG 2 cut(s) 1415, 1993
BspFNI CGCG 1 cut(s) 1972
BspLI GGNNCC 3 cut(s) 1399, 1431, 2007
BspPI GGATC 8 cut(s) 822, 989, 1077, 1106, 1194, 1223, 1311, 1629
BsrDI GCAATG 1 cut(s) 1961
BsrI ACTGG 2 cut(s) 298, 1804
BssECI CCNNGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
BssMI GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
BssT1I CCWWGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
Bst2UI CCWGG 2 cut(s) 1678, 1996
Bst4CI ACNGT 5 cut(s) 29, 200, 449, 1024, 1550
Bst6I CTCTTC 3 cut(s) 230, 238, 1704
BstC8I GCNNGC 6 cut(s) 23, 142, 383, 837, 1894, 1968
BstDEI CTNAG 3 cut(s) 1402, 1638, 2001
BstDSI CCRYGG 2 cut(s) 187, 1909
BstFNI CGCG 1 cut(s) 1972
BstHHI GCGC 1 cut(s) 1972
BstKTI GATC 9 cut(s) 817, 997, 1085, 1114, 1202, 1231, 1319, 1348, 1624
BstMAI GTCTC 5 cut(s) 12, 156, 186, 1011, 1522
BstMBI GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
BstMWI GCNNNNNNNGC 2 cut(s) 22, 1976
BstNI CCWGG 2 cut(s) 1678, 1996
BstNSI RCATGY 6 cut(s) 477, 839, 992, 1109, 1226, 1813
BstSCI CCNGG 2 cut(s) 1676, 1994
BstSFI CTRYAG 3 cut(s) 958, 1192, 1309
BstSLI GKGCMC 1 cut(s) 1401
BstUI CGCG 1 cut(s) 1972
BstV1I GCAGC 4 cut(s) 595, 625, 718, 1513
BstV2I GAAGAC 2 cut(s) 444, 504
BstX2I RGATCY 4 cut(s) 1082, 1199, 1316, 1621
BstYI RGATCY 4 cut(s) 1082, 1199, 1316, 1621
BsuRI GGCC 3 cut(s) 98, 218, 1399
BtgI CCRYGG 2 cut(s) 187, 1909
BtsIMutI CAGTG 7 cut(s) 205, 291, 454, 501, 1020, 1369, 1811
Cac8I GCNNGC 6 cut(s) 23, 142, 383, 837, 1894, 1968
CfoI GCGC 1 cut(s) 1972
Cfr13I GGNCC 7 cut(s) 949, 1066, 1183, 1300, 1397, 1398, 1801
CsiI ACCWGGT 1 cut(s) 1994
Csp6I GTAC 9 cut(s) 718, 871, 963, 975, 1092, 1135, 1209, 1326, 1729
CspCI CAANNNNNGTGG 2 cut(s) 1907, 1942
CviQI GTAC 9 cut(s) 718, 871, 963, 975, 1092, 1135, 1209, 1326, 1729
DdeI CTNAG 3 cut(s) 1402, 1638, 2001
DpnI GATC 9 cut(s) 816, 996, 1084, 1113, 1201, 1230, 1318, 1347, 1623
DpnII GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
Eam1104I CTCTTC 3 cut(s) 230, 238, 1704
EarI CTCTTC 3 cut(s) 230, 238, 1704
Eco130I CCWWGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
Eco24I GRGCYC 1 cut(s) 1401
Eco47I GGWCC 5 cut(s) 949, 1066, 1183, 1300, 1801
Eco57I CTGAAG 2 cut(s) 1455, 1888
EcoO109I RGGNCCY 2 cut(s) 1397, 1398
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 2 cut(s) 1676, 1994
EcoT14I CCWWGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
Esp3I CGTCTC 2 cut(s) 12, 156
FaqI GGGAC 1 cut(s) 581
Fnu4HI GCNGC 5 cut(s) 169, 609, 639, 732, 1502
FriOI GRGCYC 1 cut(s) 1401
Fsp4HI GCNGC 5 cut(s) 169, 609, 639, 732, 1502
FspBI CTAG 5 cut(s) 906, 1140, 1257, 1349, 1733
GlaI GCGC 1 cut(s) 1971
GluI GCNGC 5 cut(s) 169, 609, 639, 732, 1502
GsuI CTGGAG 4 cut(s) 315, 1266, 1509, 1992
HaeIII GGCC 3 cut(s) 98, 218, 1399
HhaI GCGC 1 cut(s) 1972
Hin6I GCGC 1 cut(s) 1970
HinP1I GCGC 1 cut(s) 1970
HincII GTYRAC 2 cut(s) 372, 487
HindII GTYRAC 2 cut(s) 372, 487
HindIII AAGCTT 1 cut(s) 1071
HinfI GANTC 4 cut(s) 44, 557, 1595, 1673
HphI GGTGA 3 cut(s) 947, 1513, 1571
Hpy166II GTNNAC 4 cut(s) 372, 487, 949, 1137
Hpy188I TCNGA 4 cut(s) 12, 43, 49, 2002
Hpy8I GTNNAC 4 cut(s) 372, 487, 949, 1137
HpyAV CCTTC 8 cut(s) 74, 88, 268, 349, 1388, 1469, 1473, 1672
HpyCH4III ACNGT 5 cut(s) 29, 200, 449, 1024, 1550
HpyCH4IV ACGT 1 cut(s) 2021
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 1976
HpyF3I CTNAG 3 cut(s) 1402, 1638, 2001
HpySE526I ACGT 1 cut(s) 2021
HspAI GCGC 1 cut(s) 1970
Kzo9I GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
LmnI GCTCC 2 cut(s) 299, 2011
Lsp1109I GCAGC 4 cut(s) 595, 625, 718, 1513
LweI GCATC 7 cut(s) 625, 658, 718, 748, 778, 1924, 1966
MabI ACCWGGT 1 cut(s) 1994
MaeI CTAG 5 cut(s) 906, 1140, 1257, 1349, 1733
MaeII ACGT 1 cut(s) 2021
MaeIII GTNAC 2 cut(s) 592, 1559
MalI GATC 9 cut(s) 816, 996, 1084, 1113, 1201, 1230, 1318, 1347, 1623
MboI GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
MfeI CAATTG 1 cut(s) 1569
MflI RGATCY 4 cut(s) 1082, 1199, 1316, 1621
MhlI GDGCHC 1 cut(s) 1401
MlyI GAGTC 2 cut(s) 38, 1604
MseI TTAA 7 cut(s) 654, 774, 1418, 1583, 1715, 1773, 1887
MslI CAYNNNNRTG 6 cut(s) 192, 465, 633, 693, 753, 1920
MspR9I CCNGG 2 cut(s) 1678, 1996
MunI CAATTG 1 cut(s) 1569
Mva1269I GAATGC 2 cut(s) 529, 1246
MvaI CCWGG 2 cut(s) 1678, 1996
MvnI CGCG 1 cut(s) 1972
MwoI GCNNNNNNNGC 2 cut(s) 22, 1976
NcoI CCATGG 2 cut(s) 187, 1909
NdeII GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
NlaIV GGNNCC 3 cut(s) 1399, 1431, 2007
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 1559
NspI RCATGY 6 cut(s) 477, 839, 992, 1109, 1226, 1813
PaeI GCATGC 1 cut(s) 839
PciI ACATGT 3 cut(s) 988, 1105, 1222
PctI GAATGC 2 cut(s) 529, 1246
PfeI GAWTC 2 cut(s) 557, 1673
PfoI TCCNGGA 1 cut(s) 1676
PkrI GCNGC 5 cut(s) 170, 610, 640, 733, 1503
PleI GAGTC 2 cut(s) 38, 1603
PpsI GAGTC 2 cut(s) 38, 1603
PscI ACATGT 3 cut(s) 988, 1105, 1222
PshBI ATTAAT 1 cut(s) 1715
PsiI TTATAA 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 1676, 1994
PspGI CCWGG 2 cut(s) 1676, 1994
PspN4I GGNNCC 3 cut(s) 1399, 1431, 2007
PspOMI GGGCCC 1 cut(s) 1397
PspPI GGNCC 7 cut(s) 949, 1066, 1183, 1300, 1397, 1398, 1801
PsuI RGATCY 4 cut(s) 1082, 1199, 1316, 1621
RsaI GTAC 9 cut(s) 719, 872, 964, 976, 1093, 1136, 1210, 1327, 1730
RsaNI GTAC 9 cut(s) 718, 871, 963, 975, 1092, 1135, 1209, 1326, 1729
RseI CAYNNNNRTG 6 cut(s) 192, 465, 633, 693, 753, 1920
SaqAI TTAA 7 cut(s) 654, 774, 1418, 1583, 1715, 1773, 1887
SatI GCNGC 5 cut(s) 169, 609, 639, 732, 1502
Sau3AI GATC 9 cut(s) 814, 994, 1082, 1111, 1199, 1228, 1316, 1345, 1621
Sau96I GGNCC 7 cut(s) 949, 1066, 1183, 1300, 1397, 1398, 1801
SchI GAGTC 2 cut(s) 38, 1604
ScrFI CCNGG 2 cut(s) 1678, 1996
SduI GDGCHC 1 cut(s) 1401
SexAI ACCWGGT 1 cut(s) 1994
SfaNI GCATC 7 cut(s) 625, 658, 718, 748, 778, 1924, 1966
SfcI CTRYAG 3 cut(s) 958, 1192, 1309
SinI GGWCC 5 cut(s) 949, 1066, 1183, 1300, 1801
SmiMI CAYNNNNRTG 6 cut(s) 192, 465, 633, 693, 753, 1920
SmlI CTYRAG 1 cut(s) 1496
SmoI CTYRAG 1 cut(s) 1496
SphI GCATGC 1 cut(s) 839
SsiI CCGC 2 cut(s) 168, 367
SspMI CTAG 5 cut(s) 906, 1140, 1257, 1349, 1733
StyD4I CCNGG 2 cut(s) 1676, 1994
StyI CCWWGG 6 cut(s) 187, 978, 1095, 1212, 1329, 1909
TaaI ACNGT 5 cut(s) 29, 200, 449, 1024, 1550
TaiI ACGT 1 cut(s) 2024
TaqI TCGA 2 cut(s) 63, 1758
TaqII GACCGA 1 cut(s) 1317
TatI WGTACW 1 cut(s) 962
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 557, 1673
Tru1I TTAA 7 cut(s) 654, 774, 1418, 1583, 1715, 1773, 1887
Tru9I TTAA 7 cut(s) 654, 774, 1418, 1583, 1715, 1773, 1887
TscAI CASTG 7 cut(s) 205, 298, 454, 508, 1027, 1369, 1811
TseFI GTSAC 1 cut(s) 1559
TseI GCWGC 4 cut(s) 608, 638, 731, 1501
Tsp45I GTSAC 1 cut(s) 1559
TspDTI ATGAA 6 cut(s) 87, 675, 861, 1694, 1744, 1941
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 7 cut(s) 205, 298, 454, 508, 1027, 1369, 1811
VpaK11BI GGWCC 5 cut(s) 949, 1066, 1183, 1300, 1801
VspI ATTAAT 1 cut(s) 1715
XapI RAATTY 5 cut(s) 225, 849, 1250, 1453, 1932
XbaI TCTAGA 1 cut(s) 1348
XceI RCATGY 6 cut(s) 477, 839, 992, 1109, 1226, 1813
XcmI CCANNNNNNNNNTGG 1 cut(s) 1615
XspI CTAG 5 cut(s) 906, 1140, 1257, 1349, 1733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.