Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Forward (+)

55465498 .. 55468303

Gene Structure 2806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGAAGTCGTTTAGTCTAAGGGGTTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACATGTTGATGAAATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTTGGTATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGTGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

187

Amino Acids

21.24

Weight (kDa)

4.44

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AciI	CCGC	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	165, 487
AfaI	GTAC	2 cut(s)	200, 455
AflIII	ACRYGT	2 cut(s)	154, 437
AgsI	TTSAA	4 cut(s)	7, 139, 371, 487
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	226, 491
AjuI	GAANNNNNNNTTGG	4 cut(s)	131, 163, 479, 511
AluBI	AGCT	5 cut(s)	70, 106, 131, 143, 390
AluI	AGCT	5 cut(s)	70, 106, 131, 143, 390
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	165, 487
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	297, 377
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	97, 205
AvaII	GGWCC	2 cut(s)	297, 377
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BauI	CACGAG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	464
BccI	CCATC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	2 cut(s)	228, 493
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	4 cut(s)	42, 86, 210, 465
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	228, 493
Bme18I	GGWCC	2 cut(s)	297, 377
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	297, 377
BmiI	GGNNCC	2 cut(s)	298, 379
BmrFI	CCNGG	2 cut(s)	228, 493
BmsI	GCATC	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
Bpu14I	TTCGAA	2 cut(s)	97, 205
BpuEI	CTTGAG	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	228, 493
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	464
BslFI	GGGAC	2 cut(s)	310, 363
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	310, 363
Bsp119I	TTCGAA	2 cut(s)	97, 205
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	298, 379
BspMI	ACCTGC	1 cut(s)	308
BspT104I	TTCGAA	2 cut(s)	97, 205
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	328
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	228, 493
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	198
BstBI	TTCGAA	2 cut(s)	97, 205
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	20, 332, 474
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	328
BstNI	CCWGG	2 cut(s)	228, 493
BstNSI	RCATGY	2 cut(s)	158, 307
BstSCI	CCNGG	2 cut(s)	226, 491
BstSFI	CTRYAG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	297, 377
Csp6I	GTAC	2 cut(s)	199, 454
CviAII	CATG	4 cut(s)	33, 155, 304, 558
CviJI	RGCY	8 cut(s)	70, 106, 131, 143, 192, 271, 390, 555
CviKI_1	RGCY	8 cut(s)	70, 106, 131, 143, 192, 271, 390, 555
CviQI	GTAC	2 cut(s)	199, 454
DdeI	CTNAG	3 cut(s)	20, 332, 474
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	297, 377
EcoO109I	RGGNCCY	2 cut(s)	297, 377
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	226, 491
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	4 cut(s)	36, 158, 307, 561
FaiI	YATR	7 cut(s)	34, 116, 156, 305, 420, 429, 559
FaqI	GGGAC	2 cut(s)	310, 363
FatI	CATG	4 cut(s)	32, 154, 303, 557
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	4 cut(s)	42, 86, 210, 465
Hin1II	CATG	4 cut(s)	36, 158, 307, 561
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	89, 344
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	361, 475, 535
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	292, 303, 422, 519
HpyF3I	CTNAG	3 cut(s)	20, 332, 474
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	4 cut(s)	36, 158, 307, 561
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	174, 213, 240, 253, 313, 478, 505
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	4 cut(s)	42, 86, 210, 465
MaeII	ACGT	1 cut(s)	439
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	68, 131, 301
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	146, 165, 487, 521
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	117, 246, 249, 348
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	228, 493
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	228, 493
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	36, 158, 307, 561
NlaIV	GGNNCC	2 cut(s)	298, 379
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	2 cut(s)	158, 307
NspV	TTCGAA	2 cut(s)	97, 205
PciI	ACATGT	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PpuMI	RGGWCCY	2 cut(s)	297, 377
PscI	ACATGT	1 cut(s)	154
Psp5II	RGGWCCY	2 cut(s)	297, 377
Psp6I	CCWGG	2 cut(s)	226, 491
PspGI	CCWGG	2 cut(s)	226, 491
PspN4I	GGNNCC	2 cut(s)	298, 379
PspPI	GGNCC	2 cut(s)	297, 377
PspPPI	RGGWCCY	2 cut(s)	297, 377
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	200, 455
RsaNI	GTAC	2 cut(s)	199, 454
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	297, 377
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	228, 493
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	78
SfuI	TTCGAA	2 cut(s)	97, 205
SinI	GGWCC	2 cut(s)	297, 377
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	146, 165, 487, 521
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	4 cut(s)	42, 86, 210, 465
StyD4I	CCNGG	2 cut(s)	226, 491
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	97, 205
TasI	AATT	4 cut(s)	146, 165, 487, 521
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	177, 420
TspGWI	ACGGA	2 cut(s)	62, 116
VpaK11BI	GGWCC	2 cut(s)	297, 377
XapI	RAATTY	2 cut(s)	165, 487
XceI	RCATGY	2 cut(s)	158, 307
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	4 cut(s)	42, 86, 210, 465
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.