Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Forward (+)

14243 .. 14652

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgcaagtcaaacagtggtcggagtcaccagaaaatgcagaaacatcggagatcaacaatcccaagccaaacaaagagccagaaccagacgatgtcgtctatggagatcgacaatctcaatctgatgtcaagacgaagatgaagatgccagaagagtacgatctagccaggtcgaacgactgcgcagagtacaagagggagagaaagaagaaggcgatggaggctgaagtgaggagagagctcgatcggagaagacaggaggaggagagcccagagagggaggagagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

98

Amino Acids

11.81

Weight (kDa)

5.25

Isoelectric Point (pI)

109.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
Acc16I	TGCGCA	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	158, 191
AfiI	CCNNNNNNNGG	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw21I	GWGCWC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	18
BanII	GRGCYC	2 cut(s)	243, 272
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseRI	GAGGAG	4 cut(s)	247, 275, 278, 296
Bsh1285I	CGRYCG	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	243, 272
Bsp143I	GATC	4 cut(s)	51, 106, 160, 244
BssMI	GATC	4 cut(s)	51, 106, 160, 244
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	54, 109, 163, 247
BstMBI	GATC	4 cut(s)	51, 106, 160, 244
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	157, 190
CviJI	RGCY	6 cut(s)	67, 79, 167, 224, 241, 270
CviKI_1	RGCY	6 cut(s)	67, 79, 167, 224, 241, 270
CviQI	GTAC	2 cut(s)	157, 190
DpnI	GATC	4 cut(s)	53, 108, 162, 246
DpnII	GATC	4 cut(s)	51, 106, 160, 244
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	243, 272
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	243, 272
FaiI	YATR	1 cut(s)	102
FriOI	GRGCYC	2 cut(s)	243, 272
FspBI	CTAG	1 cut(s)	164
FspI	TGCGCA	1 cut(s)	184
GlaI	GCGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	22, 49, 124, 249
Hpy188III	TCNNGA	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	4, 38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	51, 106, 160, 244
LpnPI	CCDG	8 cut(s)	42, 93, 99, 154, 162, 181, 242, 285
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	4 cut(s)	53, 108, 162, 246
MboI	GATC	4 cut(s)	51, 106, 160, 244
MboII	GAAGA	5 cut(s)	148, 154, 164, 220, 264
MhlI	GDGCHC	2 cut(s)	243, 272
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	7 cut(s)	189, 214, 225, 253, 256, 270, 274
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	4 cut(s)	51, 106, 160, 244
NmuCI	GTSAC	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	184
PflFI	GACNNNGTC	1 cut(s)	92
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	158, 191
RsaNI	GTAC	2 cut(s)	157, 190
SacI	GAGCTC	1 cut(s)	243
Sau3AI	GATC	4 cut(s)	51, 106, 160, 244
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	243, 272
SetI	ASST	2 cut(s)	173, 243
SfaNI	GCATC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	109, 173, 243
TatI	WGTACW	1 cut(s)	189
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.