Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001166

Physical Location & Seq

Genomic Coordinates Reverse (-)

11652999 .. 11656026

Gene Structure 3028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCCCATAGCTGGAGTCTAGGAAAATTAAGAACTGCTGCACACATGTTGAAGTCGTTTAGTCTAAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACATGTTGATGAAATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTCCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGGTATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGTGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

202

Amino Acids

22.88

Weight (kDa)

4.75

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	77 - 186	6.1e-06	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23895 AT4G23895 AT4G23895 AT4G23895
fragaria_vesca	FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660 FvH4_5g04660
malus_domestica	MD06G1107400.v1.1 MD14G1129100.v1.1
prunus_persica	Prupe.5G120600_v2.0.a1 Prupe.5G120600_v2.0.a1 Prupe.5G120700_v2.0.a1
pyrus_communis	pycom06g10150
rosa_chinensis	RchiOBHm_Chr1g0343991 RchiOBHm_Chr7g0194721
rosa_laevigata	RLG00000004175 RLG00000004176
rosa_multiflora	Rmu_sc0004154.1_g000003 Rmu_sc0004154.1_g000006 Rmu_sc0004924.1_g000010 Rmu_sc0008861.1_g000001 Rmu_sc0008861.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261110 Rroxscaffold_3G00261120
rosa_rugosa	Rorug07G0017600
rosa_samantha	Rh5AG347600 Rh7AG145000 Rh7AG145200 Rh7AG145300 Rh7BG145100 Rh7BG145200 Rh7CG148800 Rh7CG148900 Rh7CG149000 Rh7CG149100 Rh7CG149200 Rh7DG146200 Rh7DG146300 Rh7DG146400 Rh7DG146600
rosa_wichuraiana	Rw1G015430 Rw7G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	210, 532
AfaI	GTAC	2 cut(s)	245, 500
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	3 cut(s)	45, 199, 482
AgsI	TTSAA	4 cut(s)	52, 184, 416, 532
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	271, 536
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 524, 556
AluBI	AGCT	6 cut(s)	12, 115, 151, 176, 188, 435
AluI	AGCT	6 cut(s)	12, 115, 151, 176, 188, 435
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	210, 532
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	342, 422
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	2 cut(s)	142, 250
AvaII	GGWCC	2 cut(s)	342, 422
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BauI	CACGAG	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BciT130I	CCWGG	2 cut(s)	273, 538
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	5 cut(s)	20, 87, 131, 255, 510
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	273, 538
Bme18I	GGWCC	2 cut(s)	342, 422
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	342, 422
BmiI	GGNNCC	2 cut(s)	343, 424
BmrFI	CCNGG	2 cut(s)	273, 538
BmsI	GCATC	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	34
Bpu14I	TTCGAA	2 cut(s)	142, 250
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	273, 538
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	355, 408
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	355, 408
Bsp119I	TTCGAA	2 cut(s)	142, 250
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	343, 424
BspMI	ACCTGC	1 cut(s)	353
BspT104I	TTCGAA	2 cut(s)	142, 250
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	373
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	273, 538
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	243
BstBI	TTCGAA	2 cut(s)	142, 250
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	65, 377, 519
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	373
BstNI	CCWGG	2 cut(s)	273, 538
BstNSI	RCATGY	3 cut(s)	49, 203, 352
BstSCI	CCNGG	2 cut(s)	271, 536
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	342, 422
Csp6I	GTAC	2 cut(s)	244, 499
CviAII	CATG	5 cut(s)	46, 78, 200, 349, 603
CviJI	RGCY	9 cut(s)	12, 115, 151, 176, 188, 237, 316, 435, 600
CviKI_1	RGCY	9 cut(s)	12, 115, 151, 176, 188, 237, 316, 435, 600
CviQI	GTAC	2 cut(s)	244, 499
DdeI	CTNAG	3 cut(s)	65, 377, 519
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	342, 422
EcoO109I	RGGNCCY	2 cut(s)	342, 422
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	271, 536
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	5 cut(s)	49, 81, 203, 352, 606
FaiI	YATR	9 cut(s)	9, 47, 79, 161, 201, 350, 465, 474, 604
FaqI	GGGAC	2 cut(s)	355, 408
FatI	CATG	5 cut(s)	45, 77, 199, 348, 602
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	5 cut(s)	20, 87, 131, 255, 510
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	34
Hin1II	CATG	5 cut(s)	49, 81, 203, 352, 606
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	16, 134, 389
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	3 cut(s)	406, 520, 580
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	41, 337, 348, 467, 564
HpyF3I	CTNAG	3 cut(s)	65, 377, 519
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	5 cut(s)	49, 81, 203, 352, 606
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	219, 258, 285, 298, 358, 523, 550
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	5 cut(s)	20, 87, 131, 255, 510
MaeII	ACGT	1 cut(s)	484
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	113, 176, 346
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	5 cut(s)	26, 191, 210, 532, 566
MlyI	GAGTC	2 cut(s)	25, 383
MnlI	CCTC	4 cut(s)	162, 291, 294, 393
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	29, 479
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	273, 538
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	273, 538
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	5 cut(s)	49, 81, 203, 352, 606
NlaIV	GGNNCC	2 cut(s)	343, 424
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	3 cut(s)	49, 203, 352
NspV	TTCGAA	2 cut(s)	142, 250
PciI	ACATGT	2 cut(s)	45, 199
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	24, 383
PpsI	GAGTC	2 cut(s)	24, 383
PpuMI	RGGWCCY	2 cut(s)	342, 422
PscI	ACATGT	2 cut(s)	45, 199
Psp5II	RGGWCCY	2 cut(s)	342, 422
Psp6I	CCWGG	2 cut(s)	271, 536
PspGI	CCWGG	2 cut(s)	271, 536
PspN4I	GGNNCC	2 cut(s)	343, 424
PspPI	GGNCC	2 cut(s)	342, 422
PspPPI	RGGWCCY	2 cut(s)	342, 422
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	245, 500
RsaNI	GTAC	2 cut(s)	244, 499
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	29, 479
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	342, 422
SchI	GAGTC	2 cut(s)	25, 383
ScrFI	CCNGG	2 cut(s)	273, 538
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	2 cut(s)	142, 250
SinI	GGWCC	2 cut(s)	342, 422
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	5 cut(s)	26, 191, 210, 532, 566
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	5 cut(s)	20, 87, 131, 255, 510
StyD4I	CCNGG	2 cut(s)	271, 536
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	142, 250
TasI	AATT	5 cut(s)	26, 191, 210, 532, 566
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	29, 479
Tru9I	TTAA	2 cut(s)	29, 479
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	222, 465
TspGWI	ACGGA	2 cut(s)	107, 161
VpaK11BI	GGWCC	2 cut(s)	342, 422
XapI	RAATTY	2 cut(s)	210, 532
XceI	RCATGY	3 cut(s)	49, 203, 352
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	5 cut(s)	20, 87, 131, 255, 510
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.