Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

14860480 .. 14861239

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTAAAAGTATTGTGTTTTTTTCTACCGTTCTTGTTTTTCTCTTCTCTTTCTCATATGCAACTCCCGGGATTGCAACTTTTTACACAAGTTACACTCCATGTTACAGAGGTACTCAAGAAGGAGTGATGATCGCTGCAGCGAGTGATACATTATGGGACAATGGTCGAGTTTGTGGCAAAATGTTCACCGTGAAATGCAGCGGACCTCGTAACGCCGTGCCTCACCCTTGCACGGGGAAATCCGTGAAGGTCAAGATCGTTGACCATTGTCCCAGTGGCTGTGCTTCTACGCTCGATCTTTCTCGAGAAGCTTTTGCTCAGATCGCTAATCCTGTCGCTGGGATTATTAACATTGATTATTTTCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

124

Amino Acids

13.33

Weight (kDa)

8.57

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	46 - 121	1.2e-19	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	235, 236, 341
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	282
Ama87I	CYCGRG	2 cut(s)	68, 306
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	137, 140, 201
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	69, 70
AsuHPI	GGTGA	2 cut(s)	181, 218
AvaI	CYCGRG	2 cut(s)	68, 306
AvaII	GGWCC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	124, 152, 213
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	69, 70
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	138, 141, 202
BlsI	GCNGC	3 cut(s)	139, 142, 203
Bme1390I	CCNGG	2 cut(s)	69, 70
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	68, 306
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	69, 70
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
BoxI	GACNNNNGTC	2 cut(s)	165, 270
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	69, 70
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 236, 341
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	235, 236, 341
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	124, 152, 213
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	371
BsiHKCI	CYCGRG	2 cut(s)	68, 306
BsiSI	CCGG	2 cut(s)	69, 368
BslFI	GGGAC	2 cut(s)	173, 258
BslI	CCNNNNNNNGG	3 cut(s)	235, 236, 341
BsmFI	GGGAC	2 cut(s)	173, 258
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	2 cut(s)	68, 306
Bsp143I	GATC	4 cut(s)	132, 258, 298, 324
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	132, 258, 298, 324
Bst4CI	ACNGT	2 cut(s)	31, 193
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	321
BstKTI	GATC	4 cut(s)	135, 261, 301, 327
BstMBI	GATC	4 cut(s)	132, 258, 298, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstPAI	GACNNNNGTC	2 cut(s)	165, 270
BstSCI	CCNGG	2 cut(s)	67, 68
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	124, 152, 213
BsuRI	GGCC	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	206
Cfr9I	CCCGGG	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	3 cut(s)	282, 314, 371
CviKI_1	RGCY	3 cut(s)	282, 314, 371
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	134, 260, 300, 326
DpnII	GATC	4 cut(s)	132, 258, 298, 324
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	2 cut(s)	68, 306
FaeI	CATG	1 cut(s)	105
FaiI	YATR	4 cut(s)	58, 60, 103, 157
FaqI	GGGAC	2 cut(s)	173, 258
FatI	CATG	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	138, 141, 202
Fsp4HI	GCNGC	3 cut(s)	138, 141, 202
GluI	GCNGC	3 cut(s)	138, 141, 202
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	69, 368
Hin1II	CATG	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	312
HpaII	CCGG	2 cut(s)	69, 368
HphI	GGTGA	2 cut(s)	181, 218
Hpy166II	GTNNAC	2 cut(s)	189, 265
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	119, 256, 306, 308
Hpy8I	GTNNAC	2 cut(s)	189, 265
HpyAV	CCTTC	2 cut(s)	116, 244
HpyCH4III	ACNGT	2 cut(s)	31, 193
HpyCH4V	TGCA	5 cut(s)	62, 77, 140, 201, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	132, 258, 298, 324
LpnPI	CCDG	4 cut(s)	82, 289, 327, 348
Lsp1109I	GCAGC	3 cut(s)	124, 152, 213
MaeIII	GTNAC	3 cut(s)	92, 104, 212
MalI	GATC	4 cut(s)	134, 260, 300, 326
MboI	GATC	4 cut(s)	132, 258, 298, 324
MboII	GAAGA	1 cut(s)	37
MnlI	CCTC	3 cut(s)	104, 219, 234
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	2 cut(s)	69, 368
MspR9I	CCNGG	2 cut(s)	69, 70
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	2 cut(s)	69, 70
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	4 cut(s)	132, 258, 298, 324
NlaIII	CATG	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	139, 142, 203
PshAI	GACNNNNGTC	2 cut(s)	165, 270
PspFI	CCCAGC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	138, 141, 202
Sau3AI	GATC	4 cut(s)	132, 258, 298, 324
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	69, 70
SetI	ASST	4 cut(s)	115, 211, 255, 316
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	306
SmaI	CCCGGG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	117, 306
SmoI	CTYRAG	2 cut(s)	117, 306
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	67, 68
TaaI	ACNGT	2 cut(s)	31, 193
TaqI	TCGA	3 cut(s)	169, 297, 307
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	3 cut(s)	137, 140, 201
TspGWI	ACGGA	1 cut(s)	235
TspMI	CCCGGG	1 cut(s)	68
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.