Rmu_sc0001179.1_g000029

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001179.1
OG0001334
Physical Location & Seq
Forward (+)
130776 .. 133134
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001179.1_g000029.1.cds

Sequence Viewer

Length: 684 bp
ctgaagctcgctgggcagaggctgttggaggctggagcgcgcgattatgggctgttggaggaagacgaaggcggtctagtcagaatcgtgctagaatcgggttggaggacttctgggtttctgtccttcttctgggccagagcggaacgccgcaggtgcgaagccgggcaggctgttggaggctggagcgcgcgattatgggctgttggaggaagacgaaggcggtctagtcagaatcgtgctagaatcgggttggaggagcgcctaattgtgccggaattgagccttgtcggagctgggcgtggaaccatagccgagtcaggtcttctttggaggtttcttctagagcagtatccaaaggggaagctcaagggggacgagggcggtcagtggggctggacggggcctgtttcatcagcatgctatggtagtacccaacaaggtgtgatgattgcagcagcaggtgacgccgtatggaacaatggtgcagcatgtgggaaatttgtcaccgttagatgtacaggtcccaggaatccggtaccgcatccttgcaccggtgcaagcgtgacagtcaaaattgtagatcattgtcccggatgccaatctactctcgacctttctaaagagtctttcaccaaaatcgctaaccctgttgcgggaataattaatattgattattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

227

Amino Acids

24.48

Weight (kDa)

9.19

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 144, 452
Acc36I ACCTGC 2 cut(s) 144, 452
Acc65I GGTACC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 4 cut(s) 40, 42, 191, 193
AciI CCGC 7 cut(s) 72, 143, 151, 223, 384, 542, 656
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 433, 520, 540
AfiI CCNNNNNNNGG 4 cut(s) 132, 554, 655, 656
AgeI ACCGGT 1 cut(s) 554
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 3 cut(s) 7, 296, 367
AluI AGCT 3 cut(s) 7, 296, 367
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 2 cut(s) 135, 404
ApeKI GCWGC 3 cut(s) 455, 458, 488
ApoI RAATTY 1 cut(s) 500
AseI ATTAAT 1 cut(s) 666
AsiGI ACCGGT 1 cut(s) 554
Asp718I GGTACC 1 cut(s) 538
AspLEI GCGC 5 cut(s) 40, 42, 191, 193, 264
AspS9I GGNCC 3 cut(s) 135, 404, 524
AsuC2I CCSGG 2 cut(s) 166, 594
AsuHPI GGTGA 3 cut(s) 476, 499, 625
AvaII GGWCC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 538
BbsI GAAGAC 3 cut(s) 69, 220, 317
BbvI GCAGC 3 cut(s) 467, 470, 500
BceAI ACGGC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 529
BciVI GTATCC 1 cut(s) 363
BcnI CCSGG 2 cut(s) 166, 594
BfaI CTAG 5 cut(s) 77, 92, 228, 243, 344
BfoI RGCGCY 1 cut(s) 265
BfuAI ACCTGC 2 cut(s) 144, 452
BfuI GTATCC 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 4 cut(s) 151, 456, 459, 489
BlsI GCNGC 4 cut(s) 152, 457, 460, 490
Bme1390I CCNGG 3 cut(s) 166, 529, 594
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 3 cut(s) 135, 404, 524
BmiI GGNNCC 4 cut(s) 307, 405, 526, 540
BmrFI CCNGG 3 cut(s) 166, 529, 594
BmsI GCATC 2 cut(s) 553, 587
BpiI GAAGAC 3 cut(s) 69, 220, 317
BpmI CTGGAG 2 cut(s) 54, 205
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 166, 594
BsaBI GATNNNNATC 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 2 cut(s) 535, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 554, 655, 656
Bse118I RCCGGY 1 cut(s) 554
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 2 cut(s) 544, 602
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 132, 554, 655, 656
BsePI GCGCGC 2 cut(s) 38, 189
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 467, 470, 500
BseYI CCCAGC 2 cut(s) 11, 296
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 4 cut(s) 40, 42, 191, 193
BshFI GGCC 2 cut(s) 137, 406
BshNI GGYRCC 1 cut(s) 538
BshTI ACCGGT 1 cut(s) 554
BsiSI CCGG 5 cut(s) 165, 275, 536, 555, 594
BslFI GGGAC 3 cut(s) 389, 510, 576
BslI CCNNNNNNNGG 4 cut(s) 132, 554, 655, 656
BsmFI GGGAC 3 cut(s) 389, 510, 576
BsnI GGCC 2 cut(s) 137, 406
Bsp1407I TGTACA 1 cut(s) 518
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 7 cut(s) 72, 143, 151, 223, 384, 542, 656
BspANI GGCC 2 cut(s) 137, 406
BspFNI CGCG 4 cut(s) 40, 42, 191, 193
BspLI GGNNCC 4 cut(s) 307, 405, 526, 540
BspMI ACCTGC 2 cut(s) 144, 452
BspT107I GGYRCC 1 cut(s) 538
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 518
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 527
BssHII GCGCGC 2 cut(s) 38, 189
BssMI GATC 1 cut(s) 583
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 2 cut(s) 511, 571
BstACI GRCGYC 1 cut(s) 468
BstAUI TGTACA 1 cut(s) 518
BstC8I GCNNGC 6 cut(s) 9, 40, 171, 191, 421, 562
BstF5I GGATG 2 cut(s) 544, 602
BstFNI CGCG 4 cut(s) 40, 42, 191, 193
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 5 cut(s) 40, 42, 191, 193, 264
BstKTI GATC 1 cut(s) 586
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 4 cut(s) 13, 156, 170, 467
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 2 cut(s) 423, 495
BstSCI CCNGG 3 cut(s) 164, 527, 592
BstUI CGCG 4 cut(s) 40, 42, 191, 193
BstV1I GCAGC 3 cut(s) 467, 470, 500
BstV2I GAAGAC 3 cut(s) 69, 220, 317
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 137, 406
BtsCI GGATG 2 cut(s) 544, 602
BtsIMutI CAGTG 1 cut(s) 395
BveI ACCTGC 2 cut(s) 144, 452
Cac8I GCNNGC 6 cut(s) 9, 40, 171, 191, 421, 562
CaiI CAGNNNCTG 1 cut(s) 22
CfoI GCGC 5 cut(s) 40, 42, 191, 193, 264
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 3 cut(s) 135, 404, 524
CseI GACGC 1 cut(s) 476
Csp6I GTAC 3 cut(s) 432, 519, 539
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 2 cut(s) 420, 492
CviQI GTAC 3 cut(s) 432, 519, 539
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 23
EcoO109I RGGNCCY 2 cut(s) 404, 524
EcoRII CCWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 423, 495
FaiI YATR 7 cut(s) 48, 199, 311, 421, 426, 475, 493
FaqI GGGAC 3 cut(s) 389, 510, 576
FatI CATG 2 cut(s) 419, 491
FauI CCCGC 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 151, 456, 459, 489
FokI GGATG 2 cut(s) 531, 609
Fsp4HI GCNGC 4 cut(s) 151, 456, 459, 489
FspBI CTAG 5 cut(s) 77, 92, 228, 243, 344
GlaI GCGC 5 cut(s) 39, 41, 190, 192, 263
GluI GCNGC 4 cut(s) 151, 456, 459, 489
GsaI CCCAGC 2 cut(s) 15, 300
GsuI CTGGAG 2 cut(s) 54, 205
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 2 cut(s) 137, 406
HapII CCGG 5 cut(s) 165, 275, 536, 555, 594
HgaI GACGC 1 cut(s) 476
HhaI GCGC 5 cut(s) 40, 42, 191, 193, 264
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 2 cut(s) 423, 495
Hin6I GCGC 5 cut(s) 38, 40, 189, 191, 262
HinP1I GCGC 5 cut(s) 38, 40, 189, 191, 262
HinfI GANTC 7 cut(s) 84, 95, 235, 246, 317, 532, 626
HpaII CCGG 5 cut(s) 165, 275, 536, 555, 594
HphI GGTGA 3 cut(s) 476, 499, 625
Hpy188I TCNGA 3 cut(s) 83, 234, 293
Hpy188III TCNNGA 2 cut(s) 344, 611
HpyAV CCTTC 3 cut(s) 62, 136, 213
HpyCH4III ACNGT 2 cut(s) 511, 571
HpyCH4V TGCA 4 cut(s) 455, 488, 552, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 156, 170, 467
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 2 cut(s) 423, 495
HspAI GCGC 5 cut(s) 38, 40, 189, 191, 262
KpnI GGTACC 1 cut(s) 542
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 4 cut(s) 35, 186, 259, 293
Lsp1109I GCAGC 3 cut(s) 467, 470, 500
LweI GCATC 2 cut(s) 553, 587
MaeI CTAG 5 cut(s) 77, 92, 228, 243, 344
MaeIII GTNAC 3 cut(s) 464, 505, 565
MalI GATC 1 cut(s) 585
MbiI CCGCTC 1 cut(s) 143
MboI GATC 1 cut(s) 583
MboII GAAGA 5 cut(s) 74, 121, 225, 317, 332
MluCI AATT 5 cut(s) 267, 278, 500, 576, 663
MlyI GAGTC 2 cut(s) 326, 635
MmeI TCCRAC 7 cut(s) 6, 36, 83, 157, 187, 234, 271
MnlI CCTC 9 cut(s) 12, 22, 52, 99, 173, 203, 250, 327, 373
MseI TTAA 1 cut(s) 666
MslI CAYNNNNRTG 1 cut(s) 418
MspI CCGG 5 cut(s) 165, 275, 536, 555, 594
MspR9I CCNGG 3 cut(s) 166, 529, 594
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 4 cut(s) 40, 42, 191, 193
MwoI GCNNNNNNNGC 4 cut(s) 13, 156, 170, 467
NciI CCSGG 2 cut(s) 166, 594
NdeII GATC 1 cut(s) 583
NlaIII CATG 2 cut(s) 423, 495
NlaIV GGNNCC 4 cut(s) 307, 405, 526, 540
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 3 cut(s) 464, 505, 565
NspI RCATGY 2 cut(s) 423, 495
PaeI GCATGC 1 cut(s) 423
PaqCI CACCTGC 2 cut(s) 144, 452
PauI GCGCGC 2 cut(s) 38, 189
PfeI GAWTC 5 cut(s) 84, 95, 235, 246, 532
PfoI TCCNGGA 1 cut(s) 592
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 4 cut(s) 152, 457, 460, 490
PleI GAGTC 2 cut(s) 325, 634
PpsI GAGTC 2 cut(s) 325, 634
PpuMI RGGWCCY 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 527
PspFI CCCAGC 2 cut(s) 11, 296
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 4 cut(s) 307, 405, 526, 540
PspPI GGNCC 3 cut(s) 135, 404, 524
PspPPI RGGWCCY 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 22
PteI GCGCGC 2 cut(s) 38, 189
RsaI GTAC 3 cut(s) 433, 520, 540
RsaNI GTAC 3 cut(s) 432, 519, 539
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 4 cut(s) 151, 456, 459, 489
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 3 cut(s) 135, 404, 524
SchI GAGTC 2 cut(s) 326, 635
ScrFI CCNGG 3 cut(s) 166, 529, 594
SfaNI GCATC 2 cut(s) 553, 587
SgrAI CRCCGGYG 1 cut(s) 554
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SphI GCATGC 1 cut(s) 423
Sse9I AATT 5 cut(s) 267, 278, 500, 576, 663
SsiI CCGC 7 cut(s) 72, 143, 151, 223, 384, 542, 656
SspI AATATT 1 cut(s) 670
SspMI CTAG 5 cut(s) 77, 92, 228, 243, 344
StyD4I CCNGG 3 cut(s) 164, 527, 592
TaaI ACNGT 2 cut(s) 511, 571
TaqI TCGA 1 cut(s) 612
TasI AATT 5 cut(s) 267, 278, 500, 576, 663
TatI WGTACW 1 cut(s) 518
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 5 cut(s) 84, 95, 235, 246, 532
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 3 cut(s) 464, 505, 565
TseI GCWGC 3 cut(s) 455, 458, 488
Tsp45I GTSAC 3 cut(s) 464, 505, 565
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 524
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 1 cut(s) 500
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 2 cut(s) 423, 495
XspI CTAG 5 cut(s) 77, 92, 228, 243, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.