Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

3618535 .. 3619500

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGATTCAAAATCCATGTTCTCGTCATGGTGGTGATGGTGGCCACGGTTGTATGCCTTCCCTCACTCACGTTTGCTGCCCAGGGAACTGCCACCTTCTATACACCTCCCTATGTTCCTTCGTCATGCTACGGATTCCAGGACAATGGGGTGATGATAGCGGCAGCAAGCGATGTCATTTGGGGCAACAGAGCAGCTTGTGGAAGAAAGTACAGAGTGAAATGCACTGGAGCCACTAACCAAGGTATATCACAACCTTGCAAGGGTAACAGCGTTGTCGTCAAGATAGTCGATTACTGCCCTCCGGGATGCCATGGAACTATAGATCTCTCCAAAGAAGCCTTTACTGTCATTGCTAATCCTGATGCTGGTAAAATCAAGATCGAGTATACTCAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

8.88

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	54 - 130	2e-18	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	263, 368
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	81, 138
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	3 cut(s)	77, 164, 194
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	46, 163
BalI	TGGCCA	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	64, 176, 206
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	83, 140
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	4 cut(s)	78, 162, 165, 195
BlsI	GCNGC	4 cut(s)	79, 163, 166, 196
Bme1390I	CCNGG	3 cut(s)	83, 140, 306
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	3 cut(s)	83, 140, 306
BmsI	GCATC	2 cut(s)	299, 355
BpmI	CTGGAG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	5 cut(s)	45, 81, 82, 241, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 368
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	83, 140
BseDI	CCNNGG	5 cut(s)	45, 81, 82, 241, 313
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	263, 368
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	64, 176, 206
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	263, 368
BsnI	GGCC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	325, 381
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	5 cut(s)	45, 81, 82, 241, 313
BssMI	GATC	2 cut(s)	325, 381
BssNAI	GTATAC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	241, 313
Bst1107I	GTATAC	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	83, 140
Bst4CI	ACNGT	2 cut(s)	49, 349
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	2 cut(s)	45, 313
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	328, 384
BstMBI	GATC	2 cut(s)	325, 381
BstNI	CCWGG	2 cut(s)	83, 140
BstSCI	CCNGG	3 cut(s)	81, 138, 304
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	64, 176, 206
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	45, 313
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	17, 28, 126, 314
CviJI	RGCY	4 cut(s)	44, 197, 233, 341
CviKI_1	RGCY	4 cut(s)	44, 197, 233, 341
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	327, 383
DpnII	GATC	2 cut(s)	325, 381
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	241, 313
EcoRII	CCWGG	2 cut(s)	81, 138
EcoT14I	CCWWGG	2 cut(s)	241, 313
ErhI	CCWWGG	2 cut(s)	241, 313
FaeI	CATG	4 cut(s)	20, 31, 129, 317
FatI	CATG	4 cut(s)	16, 27, 125, 313
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	78, 162, 165, 195
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	78, 162, 165, 195
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	4 cut(s)	78, 162, 165, 195
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	4 cut(s)	20, 31, 129, 317
HinfI	GANTC	2 cut(s)	6, 135
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	46, 163
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	283, 362, 379
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	3 cut(s)	68, 106, 129
HpyCH4III	ACNGT	2 cut(s)	49, 349
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	225, 261
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	20, 31, 129, 317
Kzo9I	GATC	2 cut(s)	325, 381
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	9 cut(s)	68, 95, 125, 152, 213, 318, 354, 375, 380
Lsp1109I	GCAGC	3 cut(s)	64, 176, 206
LweI	GCATC	2 cut(s)	299, 355
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	327, 383
MboI	GATC	2 cut(s)	325, 381
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MnlI	CCTC	3 cut(s)	73, 117, 312
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	83, 140, 306
MvaI	CCWGG	2 cut(s)	83, 140
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	325, 381
NlaIII	CATG	4 cut(s)	20, 31, 129, 317
NlaIV	GGNNCC	1 cut(s)	232
PasI	CCCWGGG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	6, 135
PfoI	TCCNGGA	2 cut(s)	138, 304
PkrI	GCNGC	4 cut(s)	79, 163, 166, 196
Psp6I	CCWGG	2 cut(s)	81, 138
PspGI	CCWGG	2 cut(s)	81, 138
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	4 cut(s)	78, 162, 165, 195
Sau3AI	GATC	2 cut(s)	325, 381
ScrFI	CCNGG	3 cut(s)	83, 140, 306
SetI	ASST	7 cut(s)	74, 98, 109, 199, 247, 259, 399
SfaNI	GCATC	2 cut(s)	299, 355
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	32
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	3 cut(s)	81, 138, 304
StyI	CCWWGG	2 cut(s)	241, 313
TaaI	ACNGT	2 cut(s)	49, 349
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	291, 384
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	6, 135
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	77, 164, 194
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.