Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

11298154 .. 11298628

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGTTGCAGAACGTTTTGATTATCTTGAGCATTGTCGCCTGCCTCATCTCGACTTCTATGGCCACACCAGGAGTTGCTACTTTCTACACCAGCTATACTCCATCAGCATGCTACGGTGATACCCCAGAAGGCGTGATGATTGCATCAGCAGGTGACGCTATATGGAACAATGGTGCAGCCTGTGGGAAATATTTCACCGTTAAATGTACAGGTCCTAGGAATCCAGTACCACATCCTTGCACTGGTGCGACCGTTAAAGTAAAAATTGTAGATCATTGTCCTGGATGCCCATCAACACTCGACCTTTCTAAAGAGGCTTTCACCAAAATCGCTAACCCTGTTGCTGGAATAATTAATATTGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

125

Amino Acids

12.96

Weight (kDa)

6.68

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	52 - 123	6.5e-18	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AclI	AACGTT	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	2 cut(s)	211, 231
AfiI	CCNNNNNNNGG	2 cut(s)	245, 347
AjnI	CCWGG	2 cut(s)	70, 283
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	131, 167, 190, 316
AvaII	GGWCC	1 cut(s)	215
AvrII	CCTAGG	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	112, 301
BciT130I	CCWGG	2 cut(s)	72, 285
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	72, 285
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	72, 285
BmsI	GCATC	2 cut(s)	155, 278
BpuEI	CTTGAG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 347
Bse1I	ACTGG	2 cut(s)	227, 250
Bse8I	GATNNNNATC	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	72, 285
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	235, 293
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	245, 347
BseNI	ACTGG	2 cut(s)	227, 250
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	245, 347
BsnI	GGCC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	227, 250
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	72, 285
Bst4CI	ACNGT	3 cut(s)	119, 202, 256
BstAUI	TGTACA	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	43, 112
BstF5I	GGATG	2 cut(s)	235, 293
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	72, 285
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	70, 283
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	235, 293
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	43, 112
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	210, 230
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	4 cut(s)	65, 96, 182, 320
CviKI_1	RGCY	4 cut(s)	65, 96, 182, 320
CviQI	GTAC	2 cut(s)	210, 230
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	70, 283
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	114
FaiI	YATR	5 cut(s)	62, 99, 112, 164, 166
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	222, 300
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	114
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	4 cut(s)	131, 167, 190, 316
Hpy188III	TCNNGA	2 cut(s)	28, 52
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	119, 202, 256
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	10, 146, 179, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	155, 278
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	267, 354
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	2 cut(s)	56, 310
Mox20I	TGGCCA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	3 cut(s)	204, 258, 357
MslI	CAYNNNNRTG	1 cut(s)	109
Msp20I	TGGCCA	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	72, 285
MvaI	CCWGG	2 cut(s)	72, 285
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	114
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	70, 283
PspGI	CCWGG	2 cut(s)	70, 283
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
RsaI	GTAC	2 cut(s)	211, 231
RsaNI	GTAC	2 cut(s)	210, 230
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	204, 258, 357
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	72, 285
SetI	ASST	5 cut(s)	18, 98, 157, 217, 309
SfaNI	GCATC	2 cut(s)	155, 278
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	267, 354
SspI	AATATT	2 cut(s)	194, 361
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	70, 283
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	119, 202, 256
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	53, 303
TasI	AATT	2 cut(s)	267, 354
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	204, 258, 357
Tru9I	TTAA	3 cut(s)	204, 258, 357
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	155
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	357
XceI	RCATGY	1 cut(s)	114
XmaJI	CCTAGG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.