Rorug04G0049400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001334
Physical Location & Seq
Forward (+)
7678798 .. 7681668
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0049400.1

Sequence Viewer

Length: 1005 bp
ATGATCCACATACCAGAGAGACCGCCAGTGAAGCGACCAGATTCTGATCAGGTCCCTACCATGGAGCAACTGGAAGTTTGCTTTCCCAATCTCTCTTCTTTCTTCCATTATTCTGTTTATATATATTGGCATGAGAAAGAGAAGGAGAAGGAGATTAAGATTTTCATCATGGGTTCCTTGTTTGGAATCCTTCAACGCCCTCTAATCGCCGCCGCCGCTGTTGGCTTTGCTTCTTTTTCTTCCGACTTCTCCCTCATACTGCCCTCTCACAAATCCAACTCCAACAACTCCTCCTCGGATTTATCTACTTCAACAACAACAACTTTGTCATCGGACATTTCGCTTTCTAAACTCGCAAACCTCTCCTTTGTCTCCAGAATTCAAGTACATGTTCCCACCATTAACTTCCCAATTCCCAATTCCCACTGCAATTCCCTCTATTCGTCGGTTGCATCTTCCCCCGCTCTTCTTAAGCTCTATCACTCTGCACACTTGGCCAGAGCGCCCAACCCAACTCCATATAAACATGATACATCATCATCTGCTTCCGTCCATGACGTCTCCTACAGATGGCATTTGCCTGAGCTAAATGCTCTTGATGTTTCCGGCACCTCTGATTGTTCATCTGCAAAGATGAGGACTGTGGTCGTTTTGCTGGGATGGTTAGGAGCAAAGCAAAAGCATCTCAAGAGGTATGCCGACTGGTATACTTCCCAGGGCTTTCACGTCATTACCTTTACTTTACTCATGGCTGACATTCTCAAATACCAGCCTAGTGGTAAAGTCGAACACCACATTGACCTGCTTGTCAGTCATTTGGCTGATTGGTTAGAAGAGGAGCAGGGAAAGAACCTGCTTTTTCATACTTTTAGCAACACCGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGCACGATCCTTCTGTAATGGGCAGGATTCGGGGTTGCGTTGTGGATTCCGCACCTGTTGCGATCCACATTTGTAGAGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0008608 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019237 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022411 GO:0030951 GO:0030952 GO:0031109 GO:0032984 GO:0032991 GO:0035371 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1903047 GO:1903338 GO:1990752 GO:1990837
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

334

Amino Acids

37.34

Weight (kDa)

7.33

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 214 - 330 1e-32 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 561
Acc36I ACCTGC 2 cut(s) 810, 861
AccB1I GGYRCC 1 cut(s) 608
AccBSI CCGCTC 1 cut(s) 464
AccI GTMKAC 1 cut(s) 707
AciI CCGC 6 cut(s) 23, 210, 213, 216, 462, 969
AclWI GGATC 2 cut(s) 920, 976
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 61, 570
AflII CTTAAG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 3 cut(s) 194, 312, 383
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 1 cut(s) 714
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 2 cut(s) 475, 586
AluI AGCT 2 cut(s) 475, 586
Alw26I GTCTC 3 cut(s) 13, 376, 565
AlwI GGATC 2 cut(s) 920, 976
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 378
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 608
BccI CCATC 4 cut(s) 564, 654, 876, 992
BciT130I CCWGG 1 cut(s) 716
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 13, 376, 565
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 565
BfoI RGCGCY 1 cut(s) 506
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 2 cut(s) 810, 861
BisI GCNGC 3 cut(s) 210, 213, 216
BlsI GCNGC 3 cut(s) 211, 214, 217
Bme1390I CCNGG 1 cut(s) 716
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 54, 175, 610
BmrFI CCNGG 1 cut(s) 716
BmsI GCATC 2 cut(s) 461, 691
BoxI GACNNNNGTC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 671
BsaBI GATNNNNATC 2 cut(s) 45, 164
BsaHI GRCGYC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 60, 294, 714, 715
BsaWI WCCGGW 1 cut(s) 878
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 570
Bse1I ACTGG 3 cut(s) 26, 75, 707
Bse8I GATNNNNATC 2 cut(s) 45, 164
BseBI CCWGG 1 cut(s) 716
BseDI CCNNGG 4 cut(s) 60, 294, 714, 715
BseGI GGATG 2 cut(s) 665, 887
BseJI GATNNNNATC 2 cut(s) 45, 164
BseLI CCNNNNNNNGG 2 cut(s) 61, 570
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 3 cut(s) 26, 75, 707
BseRI GAGGAG 3 cut(s) 280, 283, 851
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 608
BsiSI CCGG 2 cut(s) 606, 879
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 61, 570
BsmAI GTCTC 3 cut(s) 13, 376, 565
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 3, 46, 925, 981
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 6 cut(s) 23, 210, 213, 216, 462, 969
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 3 cut(s) 54, 175, 610
BspMI ACCTGC 2 cut(s) 810, 861
BspPI GGATC 2 cut(s) 920, 976
BspQI GCTCTTC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 608
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 464
BsrI ACTGG 3 cut(s) 26, 75, 707
BssECI CCNNGG 4 cut(s) 60, 294, 714, 715
BssMI GATC 4 cut(s) 3, 46, 925, 981
BssNAI GTATAC 1 cut(s) 708
BssNI GRCGYC 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 3 cut(s) 100, 471, 828
BstACI GRCGYC 1 cut(s) 558
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 977
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 665, 887
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 4 cut(s) 6, 49, 928, 984
BstMAI GTCTC 3 cut(s) 13, 376, 565
BstMBI GATC 4 cut(s) 3, 46, 925, 981
BstMWI GCNNNNNNNGC 4 cut(s) 31, 215, 494, 977
BstNI CCWGG 1 cut(s) 716
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 776
BstZ17I GTATAC 1 cut(s) 708
BsuRI GGCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 665, 887
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 33, 424
BveI ACCTGC 2 cut(s) 810, 861
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 386
CviAII CATG 7 cut(s) 61, 131, 169, 389, 527, 554, 748
CviJI RGCY 8 cut(s) 225, 475, 497, 586, 720, 752, 772, 821
CviKI_1 RGCY 8 cut(s) 225, 475, 497, 586, 720, 752, 772, 821
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 582
DpnI GATC 4 cut(s) 5, 48, 927, 983
DpnII GATC 4 cut(s) 3, 46, 925, 981
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 100, 471, 828
EarI CTCTTC 3 cut(s) 100, 471, 828
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 714
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 565
FaeI CATG 7 cut(s) 64, 134, 172, 392, 530, 557, 751
FaqI GGGAC 1 cut(s) 38
FatI CATG 7 cut(s) 60, 130, 168, 388, 526, 553, 747
FauI CCCGC 1 cut(s) 469
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 3 cut(s) 210, 213, 216
FokI GGATG 2 cut(s) 672, 894
Fsp4HI GCNGC 3 cut(s) 210, 213, 216
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 210, 213, 216
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 606, 879
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 7 cut(s) 64, 134, 172, 392, 530, 557, 751
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HinfI GANTC 4 cut(s) 41, 186, 946, 965
HpaI GTTAAC 1 cut(s) 888
HpaII CCGG 2 cut(s) 606, 879
Hpy166II GTNNAC 2 cut(s) 708, 888
Hpy188I TCNGA 5 cut(s) 46, 244, 298, 334, 616
Hpy188III TCNNGA 4 cut(s) 375, 596, 688, 916
Hpy8I GTNNAC 2 cut(s) 708, 888
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 4 cut(s) 136, 142, 200, 939
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 3 cut(s) 558, 726, 890
HpyCH4V TGCA 4 cut(s) 429, 452, 488, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 215, 494, 977
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 3 cut(s) 558, 726, 890
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 7 cut(s) 64, 134, 172, 392, 530, 557, 751
HspAI GCGC 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 46
KspAI GTTAAC 1 cut(s) 888
Kzo9I GATC 4 cut(s) 3, 46, 925, 981
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 3 cut(s) 64, 668, 838
LweI GCATC 2 cut(s) 461, 691
MaeI CTAG 1 cut(s) 774
MaeII ACGT 3 cut(s) 558, 726, 890
MalI GATC 4 cut(s) 5, 48, 927, 983
MbiI CCGCTC 1 cut(s) 464
MboI GATC 4 cut(s) 3, 46, 925, 981
MboII GAAGA 6 cut(s) 87, 94, 231, 447, 458, 845
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 4 cut(s) 378, 411, 418, 430
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 4 cut(s) 267, 300, 306, 885
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 4 cut(s) 156, 402, 471, 887
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 606, 879
MspR9I CCNGG 1 cut(s) 716
MvaI CCWGG 1 cut(s) 716
MwoI GCNNNNNNNGC 4 cut(s) 31, 215, 494, 977
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 3, 46, 925, 981
NlaIII CATG 7 cut(s) 64, 134, 172, 392, 530, 557, 751
NlaIV GGNNCC 3 cut(s) 54, 175, 610
NspI RCATGY 1 cut(s) 392
PasI CCCWGGG 1 cut(s) 715
PciI ACATGT 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 41, 186, 946, 965
PkrI GCNGC 3 cut(s) 211, 214, 217
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 388
PshAI GACNNNNGTC 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 714
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 54, 175, 610
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 4 cut(s) 156, 402, 471, 887
SatI GCNGC 3 cut(s) 210, 213, 216
Sau3AI GATC 4 cut(s) 3, 46, 925, 981
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 716
SfaNI GCATC 2 cut(s) 461, 691
SfcI CTRYAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 470, 686
SmoI CTYRAG 2 cut(s) 470, 686
Sse9I AATT 4 cut(s) 378, 411, 418, 430
SsiI CCGC 6 cut(s) 23, 210, 213, 216, 462, 969
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 714
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 3 cut(s) 561, 729, 893
TaqI TCGA 1 cut(s) 786
TasI AATT 4 cut(s) 378, 411, 418, 430
TatI WGTACW 1 cut(s) 385
TauI GCSGC 3 cut(s) 212, 215, 218
TfiI GAWTC 4 cut(s) 41, 186, 946, 965
Tru1I TTAA 4 cut(s) 156, 402, 471, 887
Tru9I TTAA 4 cut(s) 156, 402, 471, 887
TscAI CASTG 2 cut(s) 33, 431
TspDTI ATGAA 3 cut(s) 154, 612, 851
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 2 cut(s) 33, 431
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 707
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.