Rh7BG359100

EG45-like domain containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001334
Physical Location & Seq
Forward (+)
37819680 .. 37821378
1699 bp
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UTR
Exon/CDS
Intron
Rh7BG359100.1

Sequence Viewer

Length: 405 bp
ATGGAAAGAATGGGATTCAAAATCCGTGTTCTCATGGTGGTGATGGTGGCTGTGGTTATATGTCTTCCCTCAGTCACGTTTGCTGCCGAGGGAACTGCCACCTTCTATACACCTCCCTATGTTCCTTCGTCATGCAATGGAAACCAGAACGATGGGGTGATGATAGCTGCAGCAAGCGATGTCATTTGGGGAAACAGAGCGGCGTGTGGAAGGAACTATAGAGTGAAATGCATTGGAGCCACTAACCAAGGTGTACCACAACCTTGCAAGGGTAACAGCGTTGTCGTAAAGATTGTCGATTATTGTCCTCCTGGATGCCAAGGAACTATAGATCTCTCCAAAGAAGCCTTTTCTGCCATTGCTAATCCTGATGCTGGAAAAATCAAGATTGAGTATACTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

8.49

Isoelectric Point (pI)

20.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 56 - 132 2.2e-19 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 395
AciI CCGC 1 cut(s) 200
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 269, 374
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 83, 167, 170
AsuHPI GGTGA 2 cut(s) 52, 169
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 70, 154, 182
BccI CCATC 2 cut(s) 37, 146
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 312
BfmI CTRYAG 3 cut(s) 168, 217, 327
BglII AGATCT 1 cut(s) 331
BisI GCNGC 4 cut(s) 84, 168, 171, 201
BlsI GCNGC 4 cut(s) 85, 169, 172, 202
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 305, 361
BpiI GAAGAC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 87, 247, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 374
Bse3DI GCAATG 2 cut(s) 142, 357
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 87, 247, 319
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 269, 374
BseMI GCAATG 2 cut(s) 142, 357
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 70, 154, 182
BslI CCNNNNNNNGG 2 cut(s) 269, 374
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 142, 357
BssECI CCNNGG 3 cut(s) 87, 247, 319
BssMI GATC 1 cut(s) 331
BssNAI GTATAC 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 247, 319
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 70, 399
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 3 cut(s) 168, 217, 327
BstV1I GCAGC 3 cut(s) 70, 154, 182
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 254
CviAII CATG 2 cut(s) 34, 132
CviJI RGCY 4 cut(s) 50, 167, 239, 347
CviKI_1 RGCY 4 cut(s) 50, 167, 239, 347
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 70, 399
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 247, 319
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 247, 319
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 247, 319
FaeI CATG 2 cut(s) 37, 135
FaiI YATR 9 cut(s) 35, 59, 61, 108, 120, 133, 219, 329, 396
FatI CATG 2 cut(s) 33, 131
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 84, 168, 171, 201
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 4 cut(s) 84, 168, 171, 201
GluI GCNGC 4 cut(s) 84, 168, 171, 201
Hin1II CATG 2 cut(s) 37, 135
HinfI GANTC 1 cut(s) 15
HphI GGTGA 2 cut(s) 52, 169
Hpy166II GTNNAC 2 cut(s) 254, 396
Hpy188III TCNNGA 2 cut(s) 368, 385
Hpy8I GTNNAC 2 cut(s) 254, 396
HpyAV CCTTC 3 cut(s) 112, 135, 204
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 135, 170, 231, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 70, 399
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 37, 135
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 158, 297, 324, 360, 381
Lsp1109I GCAGC 3 cut(s) 70, 154, 182
LweI GCATC 2 cut(s) 305, 361
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 73, 272
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 331
MnlI CCTC 4 cut(s) 79, 82, 123, 318
Mph1103I ATGCAT 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 37, 135
NlaIV GGNNCC 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 233
PfeI GAWTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 4 cut(s) 85, 169, 172, 202
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 4 cut(s) 84, 168, 171, 201
Sau3AI GATC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 312
SetI ASST 6 cut(s) 80, 104, 115, 169, 253, 265
SfaNI GCATC 2 cut(s) 305, 361
SfcI CTRYAG 3 cut(s) 168, 217, 327
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 247, 319
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 297
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 15
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 3 cut(s) 83, 167, 170
Tsp45I GTSAC 1 cut(s) 73
TspGWI ACGGA 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.