Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

7697009 .. 7701637

Gene Structure 4629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACGATGGATATAAGGAGGGGAGCCTTCCACTTTACTTCACAAACTACTGCACTAGAAATAATTGTTACAAGTTATTTGTTAGGGAAAGATTTAATGGCATTTGAAATGCGAGTTCTCATTGTGGTGGTGGCCATGGTTGTATGCCTTCCCTCGGCCGCATATGCAGAGCAGGGAACAGCTACTTTTTACACGCCTCCTTACGTTCCCTCCTCATGCTACGGATACCAAAATGATGGAGTGATGATAGCCGCAGCAAGCGATGCCATTTGGGGCAACAGAGCAGCTTGTGGAAAAAGGTACAGAGTGACATGCACCGGAGCCACTAACCAAGGTGTCCCACAACCTTGCAAGGGAACCAGTGTCGTCGTTAAAATTGTCGACTATTGTCCTCCCGGATGCAGAGGAACCATTGATCTCTCTCAAGAGGCCTTCGCCGTCATTGCTAACCCCGACGCCGGCAAAATCAAGATTAGTTATACTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

164

Amino Acids

17.48

Weight (kDa)

8.15

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	2 cut(s)	159, 252
AcoI	YGGCCR	2 cut(s)	132, 156
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	154, 353, 458
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	2 cut(s)	182, 287
AluI	AGCT	2 cut(s)	182, 287
AoxI	GGCC	3 cut(s)	132, 156, 429
ApeKI	GCWGC	2 cut(s)	254, 284
AsuC2I	CCSGG	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	266, 296
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	159, 252, 255, 285
BlsI	GCNGC	4 cut(s)	160, 253, 256, 286
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	4 cut(s)	25, 322, 358, 409
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	253, 389
BoxI	GACNNNNGTC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	135, 153, 331
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 353, 458
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	135, 153, 331
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	3 cut(s)	154, 353, 458
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	266, 296
BsgI	GTGCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	3 cut(s)	134, 158, 431
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	318, 396, 459
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	154, 353, 458
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	3 cut(s)	134, 158, 431
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	159, 252
BspANI	GGCC	3 cut(s)	134, 158, 431
BspLI	GGNNCC	4 cut(s)	25, 322, 358, 409
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	135, 153, 331
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	135, 331
BstACI	GRCGYC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	259, 460
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 263, 443
BstNSI	RCATGY	1 cut(s)	315
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	266, 296
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstZI	CGGCCG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	134, 158, 431
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	259, 460
Cfr10I	RCCGGY	1 cut(s)	458
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	136, 216, 312
CviJI	RGCY	8 cut(s)	26, 134, 158, 182, 251, 287, 323, 431
CviKI_1	RGCY	8 cut(s)	26, 134, 158, 182, 251, 287, 323, 431
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	132, 156
EagI	CGGCCG	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	135, 331
Eco147I	AGGCCT	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	135, 331
ErhI	CCWWGG	2 cut(s)	135, 331
FaeI	CATG	3 cut(s)	139, 219, 315
FaiI	YATR	8 cut(s)	14, 137, 145, 163, 165, 217, 313, 480
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	135, 215, 311
FauNDI	CATATG	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	159, 252, 255, 285
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	4 cut(s)	159, 252, 255, 285
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	4 cut(s)	159, 252, 255, 285
HaeIII	GGCC	3 cut(s)	134, 158, 431
HapII	CCGG	3 cut(s)	318, 396, 459
HgaI	GACGC	1 cut(s)	464
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	139, 219, 315
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HpaII	CCGG	3 cut(s)	318, 396, 459
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	425, 469
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	371, 458
HpyAV	CCTTC	3 cut(s)	37, 158, 442
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	53, 167, 315, 351, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 263, 443
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	3 cut(s)	139, 219, 315
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	23, 320
LpnPI	CCDG	6 cut(s)	158, 331, 373, 409, 470, 472
Lsp1109I	GCAGC	2 cut(s)	266, 296
LweI	GCATC	2 cut(s)	253, 389
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	67, 307
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	2 cut(s)	63, 375
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	8 cut(s)	12, 163, 207, 220, 223, 398, 402, 421
Mox20I	TGGCCA	1 cut(s)	134
MroNI	GCCGGC	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	95, 372
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	3 cut(s)	318, 396, 459
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	164, 263, 443
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	3 cut(s)	139, 219, 315
NlaIV	GGNNCC	4 cut(s)	25, 322, 358, 409
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	431
PdiI	GCCGGC	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	160, 253, 256, 286
PshAI	GACNNNNGTC	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	25, 322, 358, 409
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	95, 372
SatI	GCNGC	4 cut(s)	159, 252, 255, 285
Sau3AI	GATC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	7 cut(s)	184, 207, 289, 302, 337, 349, 489
SfaNI	GCATC	2 cut(s)	253, 389
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	63, 375
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	159, 252
SspMI	CTAG	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	2 cut(s)	135, 331
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	63, 375
TauI	GCSGC	2 cut(s)	161, 254
Tru1I	TTAA	2 cut(s)	95, 372
Tru9I	TTAA	2 cut(s)	95, 372
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	254, 284
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.