Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

30855492 .. 30856078

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCCGAAGAACATTTTAGTTGTGTTATGCATTGTTGCAAGCTTTATCTGGGCATCAGTAGGCACACCAGGAATTGCTACTTTCTACTCAAGCTATATTCCCTCAGCATGCTACGGGAATACACCACAAGGCATTTTGATCGCTGCTGCAGGTGATGCCATATGGAACAATGGTGCTGGATGTGGAAAGTTTTATAACGTCAAATGCACTGGATCTCGAAATCCAGTTCCACATCCATGCACCAACTCGACGGTTAGAGTAAAGATCGTTGATCATTGTCCTGGATGTCAATCCACACTTGACCTCTCTCAACCGGCTTTCGCCAAAATTGCTAACCCGGTGGCAGGAATTATCAACATTGATTACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

124

Amino Acids

12.89

Weight (kDa)

8.45

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	48 - 122	5.2e-19	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	67, 280
AluBI	AGCT	2 cut(s)	42, 93
AluI	AGCT	2 cut(s)	42, 93
AlwI	GGATC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	143, 146
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	130, 133
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	2 cut(s)	69, 282
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
Bme1390I	CCNGG	3 cut(s)	69, 282, 338
BmrFI	CCNGG	3 cut(s)	69, 282, 338
BmsI	GCATC	2 cut(s)	62, 145
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	214, 224
Bse8I	GATNNNNATC	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	69, 282
BseGI	GGATG	3 cut(s)	185, 232, 290
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	214, 224
BseXI	GCAGC	2 cut(s)	130, 133
BsiSI	CCGG	2 cut(s)	314, 338
BslI	CCNNNNNNNGG	1 cut(s)	344
Bsp143I	GATC	4 cut(s)	138, 212, 264, 271
BspCNI	CTCAG	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	214, 224
BssAI	RCCGGY	1 cut(s)	313
BssMI	GATC	4 cut(s)	138, 212, 264, 271
Bst2UI	CCWGG	2 cut(s)	69, 282
Bst4CI	ACNGT	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	40, 109
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	185, 232, 290
BstKTI	GATC	4 cut(s)	141, 215, 267, 274
BstMBI	GATC	4 cut(s)	138, 212, 264, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 329
BstNI	CCWGG	2 cut(s)	69, 282
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	3 cut(s)	67, 280, 336
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	130, 133
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	185, 232, 290
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	40, 109
Cfr10I	RCCGGY	1 cut(s)	313
CviAII	CATG	2 cut(s)	108, 237
CviJI	RGCY	3 cut(s)	42, 93, 317
CviKI_1	RGCY	3 cut(s)	42, 93, 317
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	4 cut(s)	140, 214, 266, 273
DpnII	GATC	4 cut(s)	138, 212, 264, 271
EcoRII	CCWGG	2 cut(s)	67, 280
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	2 cut(s)	111, 240
FaiI	YATR	7 cut(s)	28, 96, 109, 161, 163, 195, 238
FatI	CATG	2 cut(s)	107, 236
FauNDI	CATATG	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	3 cut(s)	192, 219, 297
Fsp4HI	GCNGC	2 cut(s)	144, 147
GluI	GCNGC	2 cut(s)	144, 147
HapII	CCGG	2 cut(s)	314, 338
Hin1II	CATG	2 cut(s)	111, 240
HindIII	AAGCTT	1 cut(s)	40
HpaII	CCGG	2 cut(s)	314, 338
HphI	GGTGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	30, 38, 149, 207, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 329
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	111, 240
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	138, 212, 264, 271
Lsp1109I	GCAGC	2 cut(s)	130, 133
LweI	GCATC	2 cut(s)	62, 145
MaeII	ACGT	1 cut(s)	198
MalI	GATC	4 cut(s)	140, 214, 266, 273
MboI	GATC	4 cut(s)	138, 212, 264, 271
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	3 cut(s)	72, 327, 348
MnlI	CCTC	2 cut(s)	112, 314
Mph1103I	ATGCAT	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	235
MspI	CCGG	2 cut(s)	314, 338
MspR9I	CCNGG	3 cut(s)	69, 282, 338
MvaI	CCWGG	2 cut(s)	69, 282
MwoI	GCNNNNNNNGC	2 cut(s)	155, 329
NciI	CCSGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	161
NdeII	GATC	4 cut(s)	138, 212, 264, 271
NlaIII	CATG	2 cut(s)	111, 240
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PaqCI	CACCTGC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	145, 148
PsiI	TTATAA	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	67, 280
PspGI	CCWGG	2 cut(s)	67, 280
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	235
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	4 cut(s)	138, 212, 264, 271
ScrFI	CCNGG	3 cut(s)	69, 282, 338
SetI	ASST	5 cut(s)	44, 95, 154, 201, 306
SfaNI	GCATC	2 cut(s)	62, 145
SfcI	CTRYAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	3 cut(s)	72, 327, 348
StyD4I	CCNGG	3 cut(s)	67, 280, 336
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	217, 248
TasI	AATT	3 cut(s)	72, 327, 348
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	2 cut(s)	143, 146
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.