RchiOBHm_Chr4g0404861

EG45-like domain containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001334
Physical Location & Seq
Forward (+)
24739627 .. 24740859
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37639

Sequence Viewer

Length: 282 bp
ATGGGACTTGTAATGCAGGTGCTGTTTGTGGTGGTGGCCATGGTTGTATGCCTTCCCTTAGCCGCGTACGCGGAACACGGAACTGCAACATTTTATACACCTCCTTACGTTCCCTCTGCATGCAATGGGTATAAAAACGACGGTGTGATGATAGCTGCAGCAAGCAATGCCATTTGGGACAATAAAGGTGCTTGTGGAAGAAGGTATAGAGTAAAATGCACTGGAGCCACAAACCAAGGTGTGCCAAAACCTTGCAAAGGTAACAGCGTACGTTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

93

Amino Acids

9.8

Weight (kDa)

9.19

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AccII CGCG 2 cut(s) 65, 71
AciI CCGC 2 cut(s) 63, 71
AcoI YGGCCR 1 cut(s) 36
AfaI GTAC 2 cut(s) 68, 270
AfiI CCNNNNNNNGG 1 cut(s) 257
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 155, 158
BalI TGGCCA 1 cut(s) 38
BbvI GCAGC 2 cut(s) 142, 170
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 7
BisI GCNGC 3 cut(s) 63, 156, 159
BlsI GCNGC 3 cut(s) 64, 157, 160
BmiI GGNNCC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 39, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 130, 172
BseDI CCNNGG 2 cut(s) 39, 235
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 130, 172
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 142, 170
Bsh1236I CGCG 2 cut(s) 65, 71
BshFI GGCC 1 cut(s) 38
BsiWI CGTACG 2 cut(s) 66, 268
BslFI GGGAC 2 cut(s) 18, 191
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 18, 191
BsnI GGCC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 2 cut(s) 63, 71
BspANI GGCC 1 cut(s) 38
BspFNI CGCG 2 cut(s) 65, 71
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 130, 172
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 39, 235
BssT1I CCWWGG 2 cut(s) 39, 235
Bst4CI ACNGT 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 121, 163
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 65, 71
BstMWI GCNNNNNNNGC 2 cut(s) 68, 167
BstNSI RCATGY 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 2 cut(s) 65, 71
BstV1I GCAGC 2 cut(s) 142, 170
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 121, 163
CaiI CAGNNNCTG 1 cut(s) 22
Csp6I GTAC 2 cut(s) 67, 269
CviAII CATG 2 cut(s) 40, 120
CviJI RGCY 4 cut(s) 38, 62, 155, 227
CviKI_1 RGCY 4 cut(s) 38, 62, 155, 227
CviQI GTAC 2 cut(s) 67, 269
DdeI CTNAG 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 39, 235
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 39, 235
ErhI CCWWGG 2 cut(s) 39, 235
FaeI CATG 2 cut(s) 43, 123
FaiI YATR 6 cut(s) 41, 49, 96, 121, 132, 207
FaqI GGGAC 2 cut(s) 18, 191
FatI CATG 2 cut(s) 39, 119
Fnu4HI GCNGC 3 cut(s) 63, 156, 159
Fsp4HI GCNGC 3 cut(s) 63, 156, 159
GluI GCNGC 3 cut(s) 63, 156, 159
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 2 cut(s) 43, 123
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 62, 195
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 108, 271
HpyCH4V TGCA 7 cut(s) 16, 86, 119, 123, 158, 219, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 167
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 108, 271
Hsp92II CATG 2 cut(s) 43, 123
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 2 cut(s) 2, 207
Lsp1109I GCAGC 2 cut(s) 142, 170
MaeII ACGT 2 cut(s) 108, 271
MaeIII GTNAC 1 cut(s) 260
MboII GAAGA 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 2 cut(s) 111, 124
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 280
Msp20I TGGCCA 1 cut(s) 38
MvnI CGCG 2 cut(s) 65, 71
MwoI GCNNNNNNNGC 2 cut(s) 68, 167
NcoI CCATGG 1 cut(s) 39
NlaIII CATG 2 cut(s) 43, 123
NlaIV GGNNCC 1 cut(s) 226
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 7
Pfl23II CGTACG 2 cut(s) 66, 268
PkrI GCNGC 3 cut(s) 64, 157, 160
PspLI CGTACG 2 cut(s) 66, 268
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 68, 270
RsaNI GTAC 2 cut(s) 67, 269
SaqAI TTAA 1 cut(s) 280
SatI GCNGC 3 cut(s) 63, 156, 159
SfcI CTRYAG 1 cut(s) 156
SphI GCATGC 1 cut(s) 123
SsiI CCGC 2 cut(s) 63, 71
StyI CCWWGG 2 cut(s) 39, 235
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 111, 274
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 155, 158
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 255
XceI RCATGY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.