Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

24704470 .. 24705012

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGGATACAGAATATTTTGATTATCTTGAGCATGGCCGCCTGCCTTATGTCGACATCTATGGCCACACCAGGAATTGCTACTTTCTACACGAGCTATGTTCGTGAGTATTTATTTAAAGAGATCCTTAAGCTTTCATTTGATGAAAAATTTATGATTTTATTATTTTTTTACATAGGCATTCTCTTTTTCATGAACTTGTTTTGTATCTTAAAGAAACCTGACACTAGTCAACATTCTCAAAGTTTAACCTCGATGGTTTTGTTTACAGCATCAGCATGCTATGGTAGTACCCAACAAGGTGTGATGATTGCATCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAGATGCACAGGTCCTCGGAATCCGGTACCGCATCCTTGCACCGGTGCAAGCGTGAGGGTAAAAATTGTAGATCATTGTCCCGGATGCCAATCTACTCTCGACCTTTCTAAAGAGTCTTTCACCAAAATCGCTAACCCTGTTGCGGGAATAATTAATATTGATTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

180

Amino Acids

19.73

Weight (kDa)

8.41

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	108 - 179	5.1e-16	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
Acc65I	GGTACC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	3 cut(s)	39, 401, 515
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	2 cut(s)	36, 63
AcsI	RAATTY	2 cut(s)	149, 359
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	292, 399
AfiI	CCNNNNNNNGG	3 cut(s)	413, 514, 515
AflII	CTTAAG	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	413
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	2 cut(s)	96, 133
AluI	AGCT	2 cut(s)	96, 133
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	36, 63
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	149, 359
AseI	ATTAAT	1 cut(s)	525
AsiGI	ACCGGT	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	335, 358, 484
AvaII	GGWCC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	2 cut(s)	39, 348
BlsI	GCNGC	2 cut(s)	40, 349
Bme1390I	CCNGG	2 cut(s)	72, 453
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	72, 453
BmsI	GCATC	5 cut(s)	281, 323, 365, 412, 446
BoxI	GACNNNNGTC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	2 cut(s)	394, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 514, 515
Bse118I	RCCGGY	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	2 cut(s)	403, 461
BseJI	GATNNNNATC	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	413, 514, 515
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	38, 65
BshNI	GGYRCC	1 cut(s)	397
BshTI	ACCGGT	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	395, 414, 453
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	413, 514, 515
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	38, 65
Bsp143I	GATC	2 cut(s)	123, 442
BspACI	CCGC	3 cut(s)	39, 401, 515
BspANI	GGCC	2 cut(s)	38, 65
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	123, 442
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	43, 280, 421
BstF5I	GGATG	2 cut(s)	403, 461
BstKTI	GATC	2 cut(s)	126, 445
BstMBI	GATC	2 cut(s)	123, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	2 cut(s)	282, 354
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	70, 451
BstV1I	GCAGC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	38, 65
BtsCI	GGATG	2 cut(s)	403, 461
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	43, 280, 421
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	291, 398
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	4 cut(s)	34, 193, 279, 351
CviJI	RGCY	4 cut(s)	38, 65, 96, 133
CviKI_1	RGCY	4 cut(s)	38, 65, 96, 133
CviQI	GTAC	2 cut(s)	291, 398
DpnI	GATC	2 cut(s)	125, 444
DpnII	GATC	2 cut(s)	123, 442
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	36, 63
Eco47I	GGWCC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	4 cut(s)	37, 196, 282, 354
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	4 cut(s)	33, 192, 278, 350
FauI	CCCGC	1 cut(s)	508
FauNDI	CATATG	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	39, 348
FokI	GGATG	2 cut(s)	390, 468
Fsp4HI	GCNGC	2 cut(s)	39, 348
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	39, 348
HaeIII	GGCC	2 cut(s)	38, 65
HapII	CCGG	3 cut(s)	395, 414, 453
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	37, 196, 282, 354
HincII	GTYRAC	2 cut(s)	54, 233
HindII	GTYRAC	2 cut(s)	54, 233
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	391, 485
HpaII	CCGG	3 cut(s)	395, 414, 453
HphI	GGTGA	3 cut(s)	335, 358, 484
Hpy166II	GTNNAC	3 cut(s)	54, 233, 267
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	4 cut(s)	28, 104, 193, 470
Hpy8I	GTNNAC	3 cut(s)	54, 233, 267
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	314, 347, 378, 411, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	37, 196, 282, 354
KpnI	GGTACC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	123, 442
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	5 cut(s)	281, 323, 365, 412, 446
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	323, 364
MalI	GATC	2 cut(s)	125, 444
MboI	GATC	2 cut(s)	123, 442
MflI	RGATCY	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	5 cut(s)	75, 149, 359, 435, 522
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	3 cut(s)	262, 396, 420
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	5 cut(s)	117, 129, 212, 248, 525
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	3 cut(s)	395, 414, 453
MspR9I	CCNGG	2 cut(s)	72, 453
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	2 cut(s)	123, 442
NlaIII	CATG	4 cut(s)	37, 196, 282, 354
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	2 cut(s)	323, 364
NspI	RCATGY	2 cut(s)	282, 354
PaeI	GCATGC	1 cut(s)	282
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	451
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	40, 349
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	2 cut(s)	292, 399
RsaNI	GTAC	2 cut(s)	291, 398
RseI	CAYNNNNRTG	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	5 cut(s)	117, 129, 212, 248, 525
SatI	GCNGC	2 cut(s)	39, 348
Sau3AI	GATC	2 cut(s)	123, 442
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	72, 453
SetI	ASST	8 cut(s)	98, 135, 223, 254, 304, 325, 385, 477
SfaNI	GCATC	5 cut(s)	281, 323, 365, 412, 446
SgrAI	CRCCGGYG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	28, 128
SmoI	CTYRAG	2 cut(s)	28, 128
SpeI	ACTAGT	1 cut(s)	227
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	5 cut(s)	75, 149, 359, 435, 522
SsiI	CCGC	3 cut(s)	39, 401, 515
SspI	AATATT	2 cut(s)	16, 529
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	70, 451
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	53, 254, 471
TasI	AATT	5 cut(s)	75, 149, 359, 435, 522
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	5 cut(s)	117, 129, 212, 248, 525
Tru9I	TTAA	5 cut(s)	117, 129, 212, 248, 525
TseFI	GTSAC	2 cut(s)	323, 364
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	323, 364
TspDTI	ATGAA	4 cut(s)	126, 159, 181, 209
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	2 cut(s)	149, 359
XceI	RCATGY	2 cut(s)	282, 354
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.