Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

21470770 .. 21471733

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAAGAATGGGATTCAAAATCCGTGTTCTCATGGTGGTGATGGTGGCTGTGGTTATATGTCTTCCCCCAGTCACGTTTGCTGCCCAGGGAACTGCCACCTTTTATACACCTCCCTATGTTCCTTCGTCGTGCTATGGATACCAGAACGATGGGGTGATGATAGCTGCCGCAAGCGATGTCATTTGGGGAAACAAAGCGGCTTGTGGAAGAAAGTATAGAGTGAAATGCATTGGAGGCACTAACCGAGGTGTACCACAACCTTGCAAGGGTAACAGCGTTGTCGTAAAGATTGTCGATTATTGTCCTCCTGGATGCCATGGAACTATAGATCTCTCCAAAGAAGCCTTTTCTGCCATTGCTAATCCTGATGCTGGAAAAATCAAGATTGAGTATACTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

135

Amino Acids

14.45

Weight (kDa)

9.01

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	56 - 132	1.4e-18	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	2 cut(s)	171, 200
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	269, 374
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	87, 310
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	83, 167
AsuHPI	GGTGA	2 cut(s)	52, 169
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	70, 154
BccI	CCATC	2 cut(s)	37, 146
BciT130I	CCWGG	2 cut(s)	89, 312
BciVI	GTATCC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	4 cut(s)	84, 168, 171, 201
BlsI	GCNGC	4 cut(s)	85, 169, 172, 202
Bme1390I	CCNGG	2 cut(s)	89, 312
BmrFI	CCNGG	2 cut(s)	89, 312
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	305, 361
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	87, 88, 247, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 374
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	89, 312
BseDI	CCNNGG	4 cut(s)	87, 88, 247, 319
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	2 cut(s)	269, 374
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	70, 154
BslI	CCNNNNNNNGG	2 cut(s)	269, 374
Bsp143I	GATC	1 cut(s)	331
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	2 cut(s)	171, 200
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	87, 88, 247, 319
BssMI	GATC	1 cut(s)	331
BssNAI	GTATAC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	89, 312
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 353
BstNI	CCWGG	2 cut(s)	89, 312
BstSCI	CCNGG	2 cut(s)	87, 310
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	70, 154
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	331
BstZ17I	GTATAC	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	34, 320
CviJI	RGCY	4 cut(s)	50, 167, 203, 347
CviKI_1	RGCY	4 cut(s)	50, 167, 203, 347
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	87, 310
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	37, 323
FatI	CATG	2 cut(s)	33, 319
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	84, 168, 171, 201
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	84, 168, 171, 201
GluI	GCNGC	4 cut(s)	84, 168, 171, 201
Hin1II	CATG	2 cut(s)	37, 323
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	52, 169
Hpy166II	GTNNAC	2 cut(s)	254, 396
Hpy188III	TCNNGA	2 cut(s)	368, 385
Hpy8I	GTNNAC	2 cut(s)	254, 396
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	231, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 353
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	37, 323
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	9 cut(s)	74, 84, 101, 158, 297, 324, 360, 381, 386
Lsp1109I	GCAGC	2 cut(s)	70, 154
LweI	GCATC	2 cut(s)	305, 361
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	73, 272
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	56, 222
MflI	RGATCY	1 cut(s)	331
MnlI	CCTC	4 cut(s)	123, 230, 242, 318
Mph1103I	ATGCAT	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	89, 312
MvaI	CCWGG	2 cut(s)	89, 312
MwoI	GCNNNNNNNGC	2 cut(s)	237, 353
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	37, 323
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	233
PasI	CCCWGGG	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	85, 169, 172, 202
Psp6I	CCWGG	2 cut(s)	87, 310
PspGI	CCWGG	2 cut(s)	87, 310
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	4 cut(s)	84, 168, 171, 201
Sau3AI	GATC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	89, 312
SetI	ASST	7 cut(s)	80, 104, 115, 169, 253, 265, 405
SfaNI	GCATC	2 cut(s)	305, 361
SfcI	CTRYAG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	38
SsiI	CCGC	2 cut(s)	171, 200
StyD4I	CCNGG	2 cut(s)	87, 310
StyI	CCWWGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	297
TauI	GCSGC	2 cut(s)	173, 203
TfiI	GAWTC	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	83, 167
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.