Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

7702455 .. 7704624

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCATTTGAAATGCGAGTTCTCATTGTGGTGGTGGCCATGGTTGTATGCCTTCCCTCGGCCGTATATGCAGAGCAGGGAACAGTCACTTTTTACACGCCTGCTTACGTTCCCTCCTCATGCAACGGATATCAAAACGATGGTGTGCTGATTGCTGCAGCAAGCGCTCCCATTTTTAACAATAAAGCTGCTTGTGGAAGAAGCTACAGAGTAACATGCACCGGCGCTACTAACCAAGGGCCGCCCCTGGTGCCACAACCTTGCAAGGGTACCAGCGTTGTGGTTAAAATTGTGGATCTCTGTCCTTCTCCTGGATGCCAAGCAACCCTCGATCTCTCTCAGGAAGCCTTTGCCACCATTGCTAACCCCGACGCCGGCAAGATCACGATTGAGTATAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

135

Amino Acids

14.02

Weight (kDa)

5.13

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	250, 269
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	2 cut(s)	36, 60
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	271
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	4 cut(s)	58, 266, 311, 374
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	246, 310
AluBI	AGCT	2 cut(s)	188, 204
AluI	AGCT	2 cut(s)	188, 204
AlwI	GGATC	1 cut(s)	303
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	36, 60, 239
ApeKI	GCWGC	3 cut(s)	155, 158, 188
Asp718I	GGTACC	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	167, 227
AspS9I	GGNCC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	250, 269
BbvI	GCAGC	3 cut(s)	142, 170, 175
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	248, 312
BfmI	CTRYAG	2 cut(s)	156, 205
BfoI	RGCGCY	2 cut(s)	168, 228
BisI	GCNGC	4 cut(s)	156, 159, 189, 242
BlsI	GCNGC	4 cut(s)	157, 160, 190, 243
Bme1390I	CCNGG	2 cut(s)	248, 312
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	252, 271
BmrFI	CCNGG	2 cut(s)	248, 312
BmsI	GCATC	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	4 cut(s)	39, 57, 235, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 266, 311, 374
Bse118I	RCCGGY	2 cut(s)	221, 374
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	248, 312
BseDI	CCNNGG	4 cut(s)	39, 57, 235, 246
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	4 cut(s)	58, 266, 311, 374
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	142, 170, 175
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	38, 62, 241
BshNI	GGYRCC	2 cut(s)	250, 269
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	222, 375
BslI	CCNNNNNNNGG	4 cut(s)	58, 266, 311, 374
BsnI	GGCC	3 cut(s)	38, 62, 241
Bsp143I	GATC	3 cut(s)	295, 331, 381
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	38, 62, 241
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	252, 271
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	2 cut(s)	250, 269
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	2 cut(s)	221, 374
BssAI	RCCGGY	2 cut(s)	221, 374
BssECI	CCNNGG	4 cut(s)	39, 57, 235, 246
BssMI	GATC	3 cut(s)	295, 331, 381
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	39, 235
Bst2UI	CCWGG	2 cut(s)	248, 312
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	102, 163, 376
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	168, 228
BstHHI	GCGC	2 cut(s)	167, 227
BstKTI	GATC	3 cut(s)	298, 334, 384
BstMBI	GATC	3 cut(s)	295, 331, 381
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 164, 250, 359
BstNI	CCWGG	2 cut(s)	248, 312
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	246, 310
BstSFI	CTRYAG	2 cut(s)	156, 205
BstV1I	GCAGC	3 cut(s)	142, 170, 175
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	295
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	38, 62, 241
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	320
Cac8I	GCNNGC	3 cut(s)	102, 163, 376
CfoI	GCGC	2 cut(s)	167, 227
Cfr10I	RCCGGY	2 cut(s)	221, 374
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	3 cut(s)	40, 120, 216
CviJI	RGCY	6 cut(s)	38, 62, 188, 204, 241, 347
CviKI_1	RGCY	6 cut(s)	38, 62, 188, 204, 241, 347
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	297, 333, 383
DpnII	GATC	3 cut(s)	295, 331, 381
EaeI	YGGCCR	2 cut(s)	36, 60
EagI	CGGCCG	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	39, 235
Eco32I	GATATC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	166
Eco52I	CGGCCG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	246, 310
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	39, 235
ErhI	CCWWGG	2 cut(s)	39, 235
FaeI	CATG	3 cut(s)	43, 123, 219
FaiI	YATR	7 cut(s)	41, 49, 67, 69, 121, 217, 396
FatI	CATG	3 cut(s)	39, 119, 215
Fnu4HI	GCNGC	4 cut(s)	156, 159, 189, 242
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	156, 159, 189, 242
GlaI	GCGC	2 cut(s)	166, 226
GluI	GCNGC	4 cut(s)	156, 159, 189, 242
HaeII	RGCGCY	2 cut(s)	168, 228
HaeIII	GGCC	3 cut(s)	38, 62, 241
HapII	CCGG	2 cut(s)	222, 375
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	167, 227
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	43, 123, 219
Hin6I	GCGC	2 cut(s)	165, 225
HinP1I	GCGC	2 cut(s)	165, 225
HpaII	CCGG	2 cut(s)	222, 375
Hpy188III	TCNNGA	2 cut(s)	341, 385
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	62, 315
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	5 cut(s)	71, 123, 158, 219, 264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 164, 250, 359
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	43, 123, 219
HspAI	GCGC	2 cut(s)	165, 225
KpnI	GGTACC	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	295, 331, 381
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	3 cut(s)	142, 170, 175
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	85, 211
MalI	GATC	3 cut(s)	297, 333, 383
MboI	GATC	3 cut(s)	295, 331, 381
MboII	GAAGA	1 cut(s)	210
MflI	RGATCY	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	4 cut(s)	67, 124, 127, 338
Mox20I	TGGCCA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	177, 285
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	2 cut(s)	222, 375
MspR9I	CCNGG	2 cut(s)	248, 312
MvaI	CCWGG	2 cut(s)	248, 312
MwoI	GCNNNNNNNGC	4 cut(s)	68, 164, 250, 359
NaeI	GCCGGC	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	295, 331, 381
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	3 cut(s)	43, 123, 219
NlaIV	GGNNCC	2 cut(s)	252, 271
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	157, 160, 190, 243
Psp6I	CCWGG	2 cut(s)	246, 310
PspGI	CCWGG	2 cut(s)	246, 310
PspN4I	GGNNCC	2 cut(s)	252, 271
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	177, 285
SatI	GCNGC	4 cut(s)	156, 159, 189, 242
Sau3AI	GATC	3 cut(s)	295, 331, 381
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	248, 312
SetI	ASST	4 cut(s)	111, 190, 206, 262
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	2 cut(s)	156, 205
SgrAI	CRCCGGYG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	246, 310
StyI	CCWWGG	2 cut(s)	39, 235
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	177, 285
Tru9I	TTAA	2 cut(s)	177, 285
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	155, 158, 188
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	141
XceI	RCATGY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.