Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

26315913 .. 26316263

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACTTGTTTTGTATCTTAAAGAAACCTGACACTAGTCAACATTCTCAAAGTTTAACCTCGATGGTTTTGTTTACAGCATCAGCATGCTATGGTAGTACCCAACAAGGTGTGATGATTGCATCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAGATGCACAGGTCCTCGGAATCCGGTACCGCATCCTTGCACCGGTGGAAGCGTGAGGGTAAAAATTGTAGATCATTGTCCCGGATGCCAATCTACTCTCGACCTTTCTAAAGAGTCTTTCACCAAAATCGCTAACCCTGTTGCTGGAATAATTAATATTGATTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

116

Amino Acids

12.31

Weight (kDa)

8.52

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	44 - 115	2e-16	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	100, 207
AfiI	CCNNNNNNNGG	2 cut(s)	221, 323
AgeI	ACCGGT	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	167
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	221
Asp718I	GGTACC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	143, 166, 292
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	5 cut(s)	89, 131, 173, 220, 254
BoxI	GACNNNNGTC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	2 cut(s)	202, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 323
Bse118I	RCCGGY	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	211, 269
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	221, 323
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	205
BshTI	ACCGGT	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	203, 222, 261
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	221, 323
BsmFI	GGGAC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	211, 269
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	90, 162
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	211, 269
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	99, 206
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	2 cut(s)	87, 159
CviQI	GTAC	2 cut(s)	99, 206
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	191
FaeI	CATG	2 cut(s)	90, 162
FaiI	YATR	5 cut(s)	88, 93, 140, 142, 160
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	86, 158
FauNDI	CATATG	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	198, 276
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	3 cut(s)	203, 222, 261
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	90, 162
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	199, 293
HpaII	CCGG	3 cut(s)	203, 222, 261
HphI	GGTGA	3 cut(s)	143, 166, 292
Hpy166II	GTNNAC	2 cut(s)	41, 75
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	41, 75
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	122, 155, 186, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	90, 162
KpnI	GGTACC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	42, 114, 174, 216, 235, 274, 309, 330
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	5 cut(s)	89, 131, 173, 220, 254
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	131, 172
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MluCI	AATT	3 cut(s)	167, 243, 330
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	70, 204, 228
MseI	TTAA	3 cut(s)	20, 56, 333
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	3 cut(s)	203, 222, 261
MspR9I	CCNGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	140
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	90, 162
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	131, 172
NspI	RCATGY	2 cut(s)	90, 162
PaeI	GCATGC	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	100, 207
RsaNI	GTAC	2 cut(s)	99, 206
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	20, 56, 333
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	6 cut(s)	31, 62, 112, 133, 193, 285
SfaNI	GCATC	5 cut(s)	89, 131, 173, 220, 254
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	35
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	3 cut(s)	167, 243, 330
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	62, 279
TasI	AATT	3 cut(s)	167, 243, 330
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	20, 56, 333
Tru9I	TTAA	3 cut(s)	20, 56, 333
TseFI	GTSAC	2 cut(s)	131, 172
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	131, 172
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	90, 162
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.