Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

19937146 .. 19937490

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAACTTGTTAAAGAAACCTGACACTAGTCAACATTCTCAAAGTTTAAGCTTGATGTTTTTGTTGACAGCATCAGCATGCTACAATTACACCCAAGAAGGTGTGATGATTGCAGCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAAATGCACAGGTCCTAGGAATCTCGGACCGCCTCCTTGCACCAATGCAAACGTAACGGTAAAAATTGTAGATCATTGTCCCGGATGCCCATTTACTCTCGACCTTTCTAAAGAGGCTTTCACCAAAATCGCTAACCCTATGGGGGGAATAATTAATATTGATTATTATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

114

Amino Acids

12.19

Weight (kDa)

7.58

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	38 - 112	2.2e-14	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	313, 314
AhlI	ACTAGT	1 cut(s)	26
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	113, 116, 146
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	182, 197
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	3 cut(s)	134, 157, 283
AvaII	GGWCC	2 cut(s)	182, 197
AvrII	CCTAGG	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	125, 128, 158
BcnI	CCSGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	2 cut(s)	27, 186
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	114, 117, 147
BlnI	CCTAGG	1 cut(s)	185
BlsI	GCNGC	3 cut(s)	115, 118, 148
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	182, 197
BmgT120I	GGNCC	2 cut(s)	182, 197
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	80, 245
BoxI	GACNNNNGTC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 314
Bse8I	GATNNNNATC	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	313, 314
BseXI	GCAGC	3 cut(s)	125, 128, 158
BsgI	GTGCAG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	313, 314
BsmFI	GGGAC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	169, 229
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	81, 153
BstPAI	GACNNNNGTC	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	125, 128, 158
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	182, 197
CpoI	CGGWCCG	1 cut(s)	197
CseI	GACGC	1 cut(s)	134
CspI	CGGWCCG	1 cut(s)	197
CviAII	CATG	2 cut(s)	78, 150
CviJI	RGCY	2 cut(s)	51, 287
CviKI_1	RGCY	2 cut(s)	51, 287
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	182, 197
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	81, 153
FaiI	YATR	5 cut(s)	79, 131, 133, 151, 311
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	77, 149
FauNDI	CATATG	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	114, 117, 147
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	114, 117, 147
FspBI	CTAG	2 cut(s)	27, 186
GluI	GCNGC	3 cut(s)	114, 117, 147
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	81, 153
HincII	GTYRAC	2 cut(s)	32, 66
HindII	GTYRAC	2 cut(s)	32, 66
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	3 cut(s)	134, 157, 283
Hpy166II	GTNNAC	2 cut(s)	32, 66
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	2 cut(s)	32, 66
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	169, 229
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	113, 146, 177, 210, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	81, 153
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	33, 105, 165, 265
Lsp1109I	GCAGC	3 cut(s)	125, 128, 158
LweI	GCATC	2 cut(s)	80, 245
MaeI	CTAG	2 cut(s)	27, 186
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	122, 163, 223
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MluCI	AATT	4 cut(s)	85, 158, 234, 321
MnlI	CCTC	2 cut(s)	213, 277
MseI	TTAA	4 cut(s)	11, 47, 171, 324
MslI	CAYNNNNRTG	1 cut(s)	76
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	81, 153
NmuCI	GTSAC	2 cut(s)	122, 163
NspI	RCATGY	2 cut(s)	81, 153
PaeI	GCATGC	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	115, 118, 148
PpuMI	RGGWCCY	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	182, 197
PspPPI	RGGWCCY	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	76
Rsr2I	CGGWCCG	1 cut(s)	197
RsrII	CGGWCCG	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	11, 47, 171, 324
SatI	GCNGC	3 cut(s)	114, 117, 147
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	182, 197
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	7 cut(s)	22, 53, 103, 124, 184, 225, 276
SfaNI	GCATC	2 cut(s)	80, 245
SinI	GGWCC	2 cut(s)	182, 197
SmiMI	CAYNNNNRTG	1 cut(s)	76
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	4 cut(s)	85, 158, 234, 321
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	27, 186
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	169, 229
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	85, 158, 234, 321
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	4 cut(s)	11, 47, 171, 324
Tru9I	TTAA	4 cut(s)	11, 47, 171, 324
TseFI	GTSAC	2 cut(s)	122, 163
TseI	GCWGC	3 cut(s)	113, 116, 146
Tsp45I	GTSAC	2 cut(s)	122, 163
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	182, 197
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	81, 153
XmaJI	CCTAGG	1 cut(s)	185
XspI	CTAG	2 cut(s)	27, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.