Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

738836 .. 740191

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAATGGAGACGCGAGTTCTCATTGTGGTGGTTGTGGTGGCTATGTTTATATGCCTTCCCTTTGCAGCATACGCAGACGAGGGAACAGCCACTTATTATACACCTCCTTATGTTCCATCCTCGTGCAACGGATACCAAAATGATGGAGTGATGATAGCGGCAGCAAGCGATGCCATTTGGGGCAACAGAGCTGCGTGTGGAAGACGCTACAGTGTGACATGCATCGGAGCCACCAACCAAGGTGTGCCACAGCCTTGCAAGGGGAATAGCGTTGTCGTTAAAATTGTGGATTACTGTCCTCCCGGATGCCGAGGACAGGATCGATCTCTCTCAAGAAGCCTTTGCTGCAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

120

Amino Acids

12.66

Weight (kDa)

8.04

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	54 - 107	1.9e-09	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	16
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	263, 319
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	68, 164, 194, 348
AsuC2I	CCSGG	1 cut(s)	306
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	80, 176, 181, 335
BccI	CCATC	2 cut(s)	127, 140
BciVI	GTATCC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	5 cut(s)	69, 162, 165, 195, 349
BlsI	GCNGC	5 cut(s)	70, 163, 166, 196, 350
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	163, 234, 299
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	241, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 319
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	241, 313
BseGI	GGATG	2 cut(s)	119, 314
BseLI	CCNNNNNNNGG	2 cut(s)	263, 319
BseXI	GCAGC	4 cut(s)	80, 176, 181, 335
Bsh1236I	CGCG	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	263, 319
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	322, 326
BspACI	CCGC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	241, 313
BssMI	GATC	2 cut(s)	322, 326
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	215, 299
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	119, 314
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	325, 329
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	322, 326
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 173, 348, 354
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	4 cut(s)	80, 176, 181, 335
BstV2I	GAAGAC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	119, 314
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	325
CseI	GACGC	2 cut(s)	22, 216
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	6 cut(s)	44, 92, 194, 233, 256, 342
CviKI_1	RGCY	6 cut(s)	44, 92, 194, 233, 256, 342
DpnI	GATC	2 cut(s)	324, 328
DpnII	GATC	2 cut(s)	322, 326
Eco130I	CCWWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	225
FaiI	YATR	7 cut(s)	47, 53, 55, 73, 102, 114, 223
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	69, 162, 165, 195, 349
FokI	GGATG	2 cut(s)	106, 321
Fsp4HI	GCNGC	5 cut(s)	69, 162, 165, 195, 349
GluI	GCNGC	5 cut(s)	69, 162, 165, 195, 349
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	2 cut(s)	22, 216
Hin1II	CATG	1 cut(s)	225
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	215, 299
HpyCH4V	TGCA	5 cut(s)	68, 129, 225, 261, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 173, 348, 354
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	322, 326
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	2 cut(s)	305, 319
Lsp1109I	GCAGC	4 cut(s)	80, 176, 181, 335
LweI	GCATC	3 cut(s)	163, 234, 299
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	324, 328
MboI	GATC	2 cut(s)	322, 326
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	352
MluCI	AATT	2 cut(s)	285, 352
MnlI	CCTC	5 cut(s)	76, 117, 133, 308, 312
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	29, 124
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	74, 173, 348, 354
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	2 cut(s)	322, 326
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	5 cut(s)	70, 163, 166, 196, 350
PspN4I	GGNNCC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	29, 124
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	5 cut(s)	69, 162, 165, 195, 349
Sau3AI	GATC	2 cut(s)	322, 326
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	3 cut(s)	109, 196, 247
SfaNI	GCATC	3 cut(s)	163, 234, 299
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	29, 124
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	2 cut(s)	285, 352
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	215, 299
TaqI	TCGA	1 cut(s)	325
TasI	AATT	2 cut(s)	285, 352
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	68, 164, 194, 348
Tsp45I	GTSAC	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	220
XceI	RCATGY	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.