Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Reverse (-)

23269415 .. 23270521

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGATCCAGAATATTTTGATTATCTTGAGCGTGGCCGCCTGCCTTATGTCGACATCTATGGCCACACCAGGAATTGCTACTTTCTACACGAGCTATGTTCCATCAGCATGCTATGGTAGTACCCAACAAGGTGTGATGATTGCAGCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAGATGTACAGGTCCTAGGAATCCGGTACCGCATCCTTGCACCGGTGCAAGCGTGACGGTCAAAATTGTAGATCATTGTCCCGGATGCCAATCTACTCTCGACCTTTCTAAAGAGTCTTTCACCAAAATCGCTAACCCTGTTGCGGGAATAATTAATATTGATTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

124

Amino Acids

12.89

Weight (kDa)

7.55

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	49 - 123	2.9e-17	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	3 cut(s)	39, 233, 347
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	2 cut(s)	36, 63
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	124, 211, 231
AfiI	CCNNNNNNNGG	3 cut(s)	245, 346, 347
AgeI	ACCGGT	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	36, 63
ApeKI	GCWGC	3 cut(s)	146, 149, 179
ApoI	RAATTY	1 cut(s)	191
AseI	ATTAAT	1 cut(s)	357
AsiGI	ACCGGT	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	229
AspA2I	CCTAGG	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	167, 190, 316
AvaII	GGWCC	1 cut(s)	215
AvrII	CCTAGG	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	158, 161, 191
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	39, 147, 150, 180
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	4 cut(s)	40, 148, 151, 181
Bme1390I	CCNGG	2 cut(s)	72, 285
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	8, 231
BmrFI	CCNGG	2 cut(s)	72, 285
BmsI	GCATC	2 cut(s)	244, 278
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	2 cut(s)	226, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 346, 347
Bse118I	RCCGGY	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	235, 293
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	3 cut(s)	245, 346, 347
BseXI	GCAGC	3 cut(s)	158, 161, 191
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	38, 65
BshNI	GGYRCC	1 cut(s)	229
BshTI	ACCGGT	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	227, 246, 285
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	245, 346, 347
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	38, 65
Bsp1407I	TGTACA	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	6, 274
BspACI	CCGC	3 cut(s)	39, 233, 347
BspANI	GGCC	2 cut(s)	38, 65
BspLI	GGNNCC	2 cut(s)	8, 231
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	6, 274
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	202, 262
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	43, 112, 253
BstF5I	GGATG	2 cut(s)	235, 293
BstKTI	GATC	2 cut(s)	9, 277
BstMBI	GATC	2 cut(s)	6, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	2 cut(s)	114, 186
BstSCI	CCNGG	2 cut(s)	70, 283
BstV1I	GCAGC	3 cut(s)	158, 161, 191
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	38, 65
BtsCI	GGATG	2 cut(s)	235, 293
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	43, 112, 253
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	123, 210, 230
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	2 cut(s)	111, 183
CviJI	RGCY	3 cut(s)	38, 65, 96
CviKI_1	RGCY	3 cut(s)	38, 65, 96
CviQI	GTAC	3 cut(s)	123, 210, 230
DpnI	GATC	2 cut(s)	8, 276
DpnII	GATC	2 cut(s)	6, 274
EaeI	YGGCCR	2 cut(s)	36, 63
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	114, 186
FaiI	YATR	8 cut(s)	50, 62, 99, 112, 117, 164, 166, 184
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	110, 182
FauI	CCCGC	1 cut(s)	340
FauNDI	CATATG	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	39, 147, 150, 180
FokI	GGATG	2 cut(s)	222, 300
Fsp4HI	GCNGC	4 cut(s)	39, 147, 150, 180
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	4 cut(s)	39, 147, 150, 180
HaeIII	GGCC	2 cut(s)	38, 65
HapII	CCGG	3 cut(s)	227, 246, 285
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	114, 186
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	223, 317
HpaII	CCGG	3 cut(s)	227, 246, 285
HphI	GGTGA	3 cut(s)	167, 190, 316
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	10, 28, 302
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	202, 262
HpyCH4V	TGCA	4 cut(s)	146, 179, 243, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	114, 186
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	6, 274
Lsp1109I	GCAGC	3 cut(s)	158, 161, 191
LweI	GCATC	2 cut(s)	244, 278
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	155, 196, 256
MalI	GATC	2 cut(s)	8, 276
MboI	GATC	2 cut(s)	6, 274
MflI	RGATCY	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	75, 191, 267, 354
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	326
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	109
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	3 cut(s)	227, 246, 285
MspR9I	CCNGG	2 cut(s)	72, 285
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	2 cut(s)	6, 274
NlaIII	CATG	2 cut(s)	114, 186
NlaIV	GGNNCC	2 cut(s)	8, 231
NmuCI	GTSAC	3 cut(s)	155, 196, 256
NspI	RCATGY	2 cut(s)	114, 186
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	4 cut(s)	40, 148, 151, 181
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	8, 231
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	124, 211, 231
RsaNI	GTAC	3 cut(s)	123, 210, 230
RseI	CAYNNNNRTG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	39, 147, 150, 180
Sau3AI	GATC	2 cut(s)	6, 274
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	72, 285
SetI	ASST	5 cut(s)	98, 136, 157, 217, 309
SfaNI	GCATC	2 cut(s)	244, 278
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	4 cut(s)	75, 191, 267, 354
SsiI	CCGC	3 cut(s)	39, 233, 347
SspI	AATATT	2 cut(s)	16, 361
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	70, 283
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	202, 262
TaqI	TCGA	2 cut(s)	53, 303
TasI	AATT	4 cut(s)	75, 191, 267, 354
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	3 cut(s)	155, 196, 256
TseI	GCWGC	3 cut(s)	146, 149, 179
Tsp45I	GTSAC	3 cut(s)	155, 196, 256
VpaK11BI	GGWCC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	2 cut(s)	114, 186
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.