Rh7DG368800

EG45-like domain containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001334
Physical Location & Seq
Forward (+)
49848400 .. 49855784
7385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG368800.1

Sequence Viewer

Length: 585 bp
ATGGAAAGAATGGGATTCAAAATCCGTGTTCTCATGGTGGTGATGGTGGCTGTGGTTATATGTCTTCCCTCAGTCACGTTTGCTGCCGAGGGAACTGCCACCTTCTATACACCTCCCTATGTTCCTTCGTCATGCTATGGAAACCAGAACGATGGGGTGATGATAGCTGCAGCAAGCGATGTCATTTGGGGAAACAGAGCGGCTTGTGGAAGAAAGTATACAGTGAAATGCATTGGAGCCACTAACCAAGGTGTACCACAGCCTTGCAAGGGTAACAGCGTTGTCGTAAAGATTGTCGATTATTGTCCTCCTGGATGCCATGGAACTATAGATCTCTCCCAAGAAGCCTTTTCTGCCATTGCTAATCCTGATGCTGGAAAAATCAAGATTGAGTATACTCAAGTTGTTGGGATGCCAACCTCGGTTTGGCGTCTCTTGCATCTACTCTATTTCTATGGAGAAATCGAGTTTTGGTTTAGGGCTCCTCCTCCTTTTCATCTTCACGGGTGGAAGGGATGGTTTCTCTCTGAGGAGTGGAAGGCTTTTAAGAGGGGATTAGCATTGTATGGTGCTGGAGTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

194

Amino Acids

21.39

Weight (kDa)

8.83

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 56 - 132 5.4e-19 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 2 cut(s) 218, 395
AciI CCGC 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 269, 374, 426
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 437
ApeKI GCWGC 3 cut(s) 83, 167, 170
AsuHPI GGTGA 2 cut(s) 52, 169
BanII GRGCYC 1 cut(s) 484
BarI GAAGNNNNNNTAC 2 cut(s) 202, 234
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 70, 154, 182
BccI CCATC 3 cut(s) 37, 146, 510
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 437
BfmI CTRYAG 2 cut(s) 168, 327
BglII AGATCT 1 cut(s) 331
BisI GCNGC 4 cut(s) 84, 168, 171, 201
BlsI GCNGC 4 cut(s) 85, 169, 172, 202
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 238, 483
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 4 cut(s) 305, 361, 402, 448
BpiI GAAGAC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 4 cut(s) 87, 247, 319, 420
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 374, 426
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 4 cut(s) 87, 247, 319, 420
BseGI GGATG 3 cut(s) 320, 417, 521
BseLI CCNNNNNNNGG 3 cut(s) 269, 374, 426
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 84, 519
BseRI GAGGAG 3 cut(s) 474, 477, 545
BseXI GCAGC 3 cut(s) 70, 154, 182
BsiSI CCGG 1 cut(s) 580
BslI CCNNNNNNNGG 3 cut(s) 269, 374, 426
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 83, 520
BspLI GGNNCC 2 cut(s) 238, 483
BspMAI CTGCAG 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 357
BssECI CCNNGG 4 cut(s) 87, 247, 319, 420
BssMI GATC 1 cut(s) 331
BssNAI GTATAC 2 cut(s) 219, 396
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 2 cut(s) 247, 319
Bst1107I GTATAC 2 cut(s) 219, 396
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 70, 528
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 3 cut(s) 320, 417, 521
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 353, 436
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 168, 327
BstV1I GCAGC 3 cut(s) 70, 154, 182
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 2 cut(s) 219, 396
BtgI CCRYGG 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 3 cut(s) 320, 417, 521
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 175
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 254
CviAII CATG 3 cut(s) 34, 132, 320
CviJI RGCY 8 cut(s) 50, 167, 203, 239, 262, 347, 482, 542
CviKI_1 RGCY 8 cut(s) 50, 167, 203, 239, 262, 347, 482, 542
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 70, 528
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 247, 319
Eco24I GRGCYC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 247, 319
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 247, 319
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 3 cut(s) 37, 135, 323
FatI CATG 3 cut(s) 33, 131, 319
FblI GTMKAC 2 cut(s) 218, 395
Fnu4HI GCNGC 4 cut(s) 84, 168, 171, 201
FokI GGATG 3 cut(s) 327, 424, 528
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 4 cut(s) 84, 168, 171, 201
GluI GCNGC 4 cut(s) 84, 168, 171, 201
HapII CCGG 1 cut(s) 580
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 3 cut(s) 37, 135, 323
HinfI GANTC 2 cut(s) 15, 576
HpaII CCGG 1 cut(s) 580
HphI GGTGA 2 cut(s) 52, 169
Hpy166II GTNNAC 3 cut(s) 219, 254, 396
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 2 cut(s) 368, 385
Hpy8I GTNNAC 3 cut(s) 219, 254, 396
HpyAV CCTTC 4 cut(s) 112, 135, 505, 532
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 170, 231, 267, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 436
HpyF3I CTNAG 2 cut(s) 70, 528
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 3 cut(s) 37, 135, 323
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 2 cut(s) 236, 487
LpnPI CCDG 6 cut(s) 158, 297, 324, 360, 381, 558
Lsp1109I GCAGC 3 cut(s) 70, 154, 182
LweI GCATC 4 cut(s) 305, 361, 402, 448
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 73, 272
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 331
MboII GAAGA 3 cut(s) 56, 222, 491
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 484
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 9 cut(s) 79, 82, 123, 318, 430, 495, 498, 523, 543
Mph1103I ATGCAT 1 cut(s) 233
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 353, 436
NcoI CCATGG 1 cut(s) 319
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 37, 135, 323
NlaIV GGNNCC 2 cut(s) 238, 483
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 233
PfeI GAWTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 4 cut(s) 85, 169, 172, 202
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 238, 483
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 4 cut(s) 84, 168, 171, 201
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 484
SetI ASST 6 cut(s) 80, 104, 115, 169, 253, 422
SfaNI GCATC 4 cut(s) 305, 361, 402, 448
SfcI CTRYAG 2 cut(s) 168, 327
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SsiI CCGC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 247, 319
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 297, 465
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 3 cut(s) 83, 167, 170
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 485
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XmiI GTMKAC 2 cut(s) 218, 395
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.