RchiOBHm_Chr4g0404841

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001334
Physical Location & Seq
Forward (+)
24710670 .. 24711023
354 bp
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UTR
Exon/CDS
Intron
PRQ37637

Sequence Viewer

Length: 354 bp
ATGAACTTGTTTTGTATGTTAAAGAAACCTGACACTAATCAACATTCTCAAAGTTTAAGCTTGATGTTTTTGTTGACAGCATCAGCATGCTACAATTATACCCAAGAAGGTGTGATGATTGCAGCAGCAGGTGACGCCATATGGAACAATGGTGCGGCATGTGGGAAATTTGTCACGGTTAAATGCACAGGTCCTAGGAATCTCGCACCGCCTCCTTGCACCAATGAAAACGTAACGGTAAAAATTATAGATCATTGTCCCGGATGTCCATTTACTCTCGACCTTTCTAAAGAGGCTTTCACCAAAATCGCTAACCCTATGGGGGGAATAATTAATATTGATTATTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

117

Amino Acids

12.68

Weight (kDa)

6.68

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 41 - 115 1.9e-14 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AciI CCGC 2 cut(s) 155, 209
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 322, 323
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 1 cut(s) 167
AseI ATTAAT 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 143, 292
AvaII GGWCC 1 cut(s) 191
AvrII CCTAGG 1 cut(s) 194
BbvI GCAGC 2 cut(s) 134, 137
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 3 cut(s) 123, 126, 156
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 3 cut(s) 124, 127, 157
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 323
Bse8I GATNNNNATC 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 322, 323
BseXI GCAGC 2 cut(s) 134, 137
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 322, 323
BsmFI GGGAC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 2 cut(s) 155, 209
BspMI ACCTGC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 178, 238
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 90, 162
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 134, 137
BtsCI GGATG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 143
CviAII CATG 2 cut(s) 87, 159
CviJI RGCY 2 cut(s) 60, 296
CviKI_1 RGCY 2 cut(s) 60, 296
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 90, 162
FaiI YATR 8 cut(s) 17, 88, 99, 140, 142, 160, 248, 320
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 86, 158
FauNDI CATATG 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 123, 126, 156
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 123, 126, 156
FspBI CTAG 1 cut(s) 195
GluI GCNGC 3 cut(s) 123, 126, 156
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 90, 162
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 261
HphI GGTGA 2 cut(s) 143, 292
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 178, 238
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 122, 186, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 90, 162
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 42, 114, 174, 274
Lsp1109I GCAGC 2 cut(s) 134, 137
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 131, 172, 232
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MluCI AATT 4 cut(s) 94, 167, 243, 330
MnlI CCTC 2 cut(s) 222, 286
MseI TTAA 4 cut(s) 20, 56, 180, 333
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 1 cut(s) 261
NdeI CATATG 1 cut(s) 140
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 90, 162
NmuCI GTSAC 2 cut(s) 131, 172
NspI RCATGY 2 cut(s) 90, 162
PaeI GCATGC 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 3 cut(s) 124, 127, 157
PpuMI RGGWCCY 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 191
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 4 cut(s) 20, 56, 180, 333
SatI GCNGC 3 cut(s) 123, 126, 156
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 261
SetI ASST 7 cut(s) 31, 62, 112, 133, 193, 234, 285
SfaNI GCATC 1 cut(s) 89
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 85
SphI GCATGC 1 cut(s) 90
Sse9I AATT 4 cut(s) 94, 167, 243, 330
SsiI CCGC 2 cut(s) 155, 209
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 178, 238
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 94, 167, 243, 330
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 4 cut(s) 20, 56, 180, 333
Tru9I TTAA 4 cut(s) 20, 56, 180, 333
TseFI GTSAC 2 cut(s) 131, 172
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 2 cut(s) 131, 172
TspDTI ATGAA 2 cut(s) 17, 240
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 167
XceI RCATGY 2 cut(s) 90, 162
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.