RchiOBHm_Chr7g0224401

EG45-like domain containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001334
Physical Location & Seq
Forward (+)
46498329 .. 46498759
431 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20094

Sequence Viewer

Length: 249 bp
ATGATAGCTGCAGCAAGCGATGTCATTTGGGGAAACAAAGCGGCTTGTGGAAGAAAGTATACAGTGAAATGCATTGGAGGCACTAACCAAGGTGTACCACAACCTTGCAAGGGTAACAGCGTTGTCGTAAAGATTGTCGATTATTGTCCTCCTGGATGCCATGGAACTATAGATCTCTCCAAAGAAGCCTTTTCTGCCATTGCTAATCCTGATGCTGGAAAAATCAAGATTGAGTATACTCAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

82

Amino Acids

8.57

Weight (kDa)

8.65

Isoelectric Point (pI)

15.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 3 - 79 3.8e-19 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 59, 236
AciI CCGC 1 cut(s) 41
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 110, 215
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 8, 11
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
BbvI GCAGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 153
BfmI CTRYAG 2 cut(s) 9, 168
BglII AGATCT 1 cut(s) 172
BisI GCNGC 3 cut(s) 9, 12, 42
BlsI GCNGC 3 cut(s) 10, 13, 43
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 146, 202
BsaJI CCNNGG 2 cut(s) 88, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 215
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 88, 160
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 110, 215
BseMI GCAATG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 110, 215
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 88, 160
BssMI GATC 1 cut(s) 172
BssNAI GTATAC 2 cut(s) 60, 237
BssT1I CCWWGG 2 cut(s) 88, 160
Bst1107I GTATAC 2 cut(s) 60, 237
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 78, 194
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 9, 168
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZ17I GTATAC 2 cut(s) 60, 237
BtgI CCRYGG 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 95
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 8, 44, 188
CviKI_1 RGCY 3 cut(s) 8, 44, 188
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 88, 160
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 88, 160
EcoT22I ATGCAT 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 88, 160
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 60, 162, 170, 237
FatI CATG 1 cut(s) 160
FblI GTMKAC 2 cut(s) 59, 236
Fnu4HI GCNGC 3 cut(s) 9, 12, 42
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 9, 12, 42
GluI GCNGC 3 cut(s) 9, 12, 42
Hin1II CATG 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 60, 95, 237
Hpy188III TCNNGA 2 cut(s) 209, 226
Hpy8I GTNNAC 3 cut(s) 60, 95, 237
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 11, 72, 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 194
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 138, 165, 201, 222, 227
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 2 cut(s) 146, 202
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 63
MflI RGATCY 1 cut(s) 172
MnlI CCTC 2 cut(s) 71, 159
Mph1103I ATGCAT 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 78, 194
NcoI CCATGG 1 cut(s) 160
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 3 cut(s) 10, 13, 43
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SatI GCNGC 3 cut(s) 9, 12, 42
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 153
SetI ASST 4 cut(s) 10, 94, 106, 246
SfaNI GCATC 2 cut(s) 146, 202
SfcI CTRYAG 2 cut(s) 9, 168
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 2 cut(s) 88, 160
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 138
TauI GCSGC 1 cut(s) 44
TscAI CASTG 1 cut(s) 69
TseI GCWGC 2 cut(s) 8, 11
TspRI CASTG 1 cut(s) 69
XmiI GTMKAC 2 cut(s) 59, 236
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.