Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

64362394 .. 64362915

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGATTCAAAATCCGTGTTCTCATGGTGGTGATGGTGGCTGTGGTTATATGTCTTCCCTCAGTCACGTTTGCTGCCGAGGGAACTGCCACCTTCTATACACCTCCCTATGTTCCTTCGTCATGCTATGGATACCAGAACGATGGGGTGATGATAGCTGCAGCAAGCGATGTCATTTGGGGAAACAGAGCGGCGTGTGGAAGGAACTATAGAGTGAAATGCATTGGAGGCACTAACCAAGGTGTACCACAACCTTGCAAGGGTAACAGCGTTGTCGTAAAGATTGTCGATTATTGTCCTCCTGGATGCCATGGAACTATAGATCTCTCCAAAGAAGCCTTTTCTGCCATTGCTAATCCTGATGCTGGAAAAATCAAGATTGAGTATACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

131

Amino Acids

13.92

Weight (kDa)

8.48

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	53 - 129	1.8e-18	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	260, 365
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	74, 158, 161
AsuHPI	GGTGA	2 cut(s)	43, 160
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	61, 145, 173
BccI	CCATC	2 cut(s)	28, 137
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	125
BfmI	CTRYAG	3 cut(s)	159, 208, 318
BfuI	GTATCC	1 cut(s)	125
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	75, 159, 162, 192
BlsI	GCNGC	4 cut(s)	76, 160, 163, 193
Bme1390I	CCNGG	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	296, 352
BpiI	GAAGAC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	78, 238, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 365
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	78, 238, 310
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	260, 365
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	61, 145, 173
BslI	CCNNNNNNNGG	2 cut(s)	260, 365
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	78, 238, 310
BssMI	GATC	1 cut(s)	322
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	238, 310
Bst1107I	GTATAC	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	61, 390
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 344
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	3 cut(s)	159, 208, 318
BstV1I	GCAGC	3 cut(s)	61, 145, 173
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	322
BstZ17I	GTATAC	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	3 cut(s)	25, 123, 311
CviJI	RGCY	3 cut(s)	41, 158, 338
CviKI_1	RGCY	3 cut(s)	41, 158, 338
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	61, 390
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	238, 310
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	238, 310
EcoT22I	ATGCAT	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	238, 310
FaeI	CATG	3 cut(s)	28, 126, 314
FatI	CATG	3 cut(s)	24, 122, 310
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	75, 159, 162, 192
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	75, 159, 162, 192
GluI	GCNGC	4 cut(s)	75, 159, 162, 192
Hin1II	CATG	3 cut(s)	28, 126, 314
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	43, 160
Hpy166II	GTNNAC	2 cut(s)	245, 387
Hpy188III	TCNNGA	2 cut(s)	359, 376
Hpy8I	GTNNAC	2 cut(s)	245, 387
HpyAV	CCTTC	3 cut(s)	103, 126, 195
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	161, 222, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 344
HpyF3I	CTNAG	2 cut(s)	61, 390
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	28, 126, 314
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	149, 288, 315, 351, 372
Lsp1109I	GCAGC	3 cut(s)	61, 145, 173
LweI	GCATC	2 cut(s)	296, 352
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	64, 263
MalI	GATC	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	322
MnlI	CCTC	5 cut(s)	70, 73, 114, 221, 309
Mph1103I	ATGCAT	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	228, 344
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	28, 126, 314
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	76, 160, 163, 193
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	4 cut(s)	75, 159, 162, 192
Sau3AI	GATC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	6 cut(s)	71, 95, 106, 160, 244, 256
SfaNI	GCATC	2 cut(s)	296, 352
SfcI	CTRYAG	3 cut(s)	159, 208, 318
SmiMI	CAYNNNNRTG	1 cut(s)	29
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	238, 310
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	288
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	74, 158, 161
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.