Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

7691982 .. 7696328

Gene Structure 4347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGATTGGAAATGCGAGTTCTCCTTGTGCTTGCCATGGCTATATGCCTCCCCTCCGCCGCATATGCAGCCGATGGAACAGCCACTTTTTATACACCTCCTTATGTTCCCTCCTCATGCTACGGATACCAAAATGATGGAGTGATGATAGCCGCAGCAAGCGATGCCATTTGGGGCAACAGAGCAGCTTGTGGAAAAAGGTACAGAGTGACATGCACCGGAGCCACTAACCAAGGTGTCCCACAACCTTGCAAGGGAACCAGTGTCGTCATTAAAATTGTCGACTATTGTCCTCCCGGATGCAGAGGAACCATTGATCTCTCTCAAGAGGCCTTCGCCGTCATTGCTAACCCCGACGCCGGCAAAATCAAGATTAGTTATACTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

131

Amino Acids

13.66

Weight (kDa)

8.16

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	3 cut(s)	57, 60, 153
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	254, 359
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	68, 155, 185
AsuC2I	CCSGG	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	80, 167, 197
BccI	CCATC	2 cut(s)	68, 131
BceAI	ACGGC	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	60, 69, 153, 156, 186
BlsI	GCNGC	5 cut(s)	61, 70, 154, 157, 187
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	223, 259, 310
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	154, 290
BoxI	GACNNNNGTC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	36, 232
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 359
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	36, 232
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	254, 359
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	80, 167, 197
BshFI	GGCC	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	219, 297, 360
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	254, 359
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	316
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	57, 60, 153
BspANI	GGCC	1 cut(s)	332
BspLI	GGNNCC	3 cut(s)	223, 259, 310
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	36, 232
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	36, 232
BstACI	GRCGYC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	33, 160, 361
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 68, 164, 344
BstNSI	RCATGY	1 cut(s)	216
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	80, 167, 197
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	33, 160, 361
Cfr10I	RCCGGY	1 cut(s)	359
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	37, 117, 213
CviJI	RGCY	7 cut(s)	41, 71, 83, 152, 188, 224, 332
CviKI_1	RGCY	7 cut(s)	41, 71, 83, 152, 188, 224, 332
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	36, 232
Eco147I	AGGCCT	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	36, 232
ErhI	CCWWGG	2 cut(s)	36, 232
FaeI	CATG	3 cut(s)	40, 120, 216
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	36, 116, 212
FauNDI	CATATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	5 cut(s)	60, 69, 153, 156, 186
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	5 cut(s)	60, 69, 153, 156, 186
GluI	GCNGC	5 cut(s)	60, 69, 153, 156, 186
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	3 cut(s)	219, 297, 360
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	40, 120, 216
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	219, 297, 360
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	326, 370
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	68, 216, 252, 303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 68, 164, 344
HpyF3I	CTNAG	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	40, 120, 216
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	232, 274, 310, 371, 373
Lsp1109I	GCAGC	3 cut(s)	80, 167, 197
LweI	GCATC	2 cut(s)	154, 290
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MluCI	AATT	1 cut(s)	276
MnlI	CCTC	8 cut(s)	59, 64, 108, 121, 124, 299, 303, 322
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	1 cut(s)	273
MspI	CCGG	3 cut(s)	219, 297, 360
MspR9I	CCNGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	65, 68, 164, 344
NaeI	GCCGGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	1 cut(s)	316
NgoMIV	GCCGGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	40, 120, 216
NlaIV	GGNNCC	3 cut(s)	223, 259, 310
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	61, 70, 154, 157, 187
PshAI	GACNNNNGTC	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	223, 259, 310
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	60, 69, 153, 156, 186
Sau3AI	GATC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	100, 190, 203, 238, 250, 390
SfaNI	GCATC	2 cut(s)	154, 290
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	3 cut(s)	57, 60, 153
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	36, 232
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	276
TauI	GCSGC	2 cut(s)	62, 155
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	68, 155, 185
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.