Rmu_sc0001179.1_g000019

EG45-like domain containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001179.1
OG0001334
Physical Location & Seq
Reverse (-)
88060 .. 89448
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001179.1_g000019.1.cds

Sequence Viewer

Length: 357 bp
atggttgtatgccctcccttagccgcgtacgcagaacacggaactgcaacattttatacacctccttacgttccctctgcatgcaatgggtataaaaacgacggtgtgatgatagctgcagcaagcaatgccatttgggacaatagaggtgcttgtggaagaaggtatagagtaaaatgcactggagccacaaaccaaggagtgccaaaaccttgcaaaggtaacagcgttgtggttaaaatcgtggatttctgtcctcctggatgccatggaaccatcgatctctctcaagaagcctttgctgccatcgctaaccctgatgctggcaaaatcaatattgagtttaccgaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

118

Amino Acids

12.42

Weight (kDa)

7.55

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 1 cut(s) 24
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 218, 323
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 116, 119, 302
BbvI GCAGC 3 cut(s) 103, 131, 289
BccI CCATC 2 cut(s) 284, 314
BciT130I CCWGG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 4 cut(s) 24, 117, 120, 303
BlsI GCNGC 4 cut(s) 25, 118, 121, 304
Bme1390I CCNGG 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 187, 274
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 254, 310
BpmI CTGGAG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 196, 268, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 323
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 2 cut(s) 91, 133
BseBI CCWGG 1 cut(s) 261
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 196, 268, 348
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 2 cut(s) 218, 323
BseMI GCAATG 2 cut(s) 91, 133
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 3 cut(s) 103, 131, 289
Bsh1236I CGCG 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 279
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 218, 323
BsmFI GGGAC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 1 cut(s) 24
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 187, 274
BspMAI CTGCAG 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 91, 133
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 196, 268, 348
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 196, 268
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 82, 124, 325
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 29, 128, 302, 308
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 103, 131, 289
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 82, 124, 325
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 81, 269
CviJI RGCY 4 cut(s) 23, 116, 188, 296
CviKI_1 RGCY 4 cut(s) 23, 116, 188, 296
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 196, 268
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 196, 268
ErhI CCWWGG 2 cut(s) 196, 268
FaeI CATG 2 cut(s) 84, 272
FaiI YATR 6 cut(s) 10, 57, 82, 93, 168, 270
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 80, 268
Fnu4HI GCNGC 4 cut(s) 24, 117, 120, 303
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 24, 117, 120, 303
GluI GCNGC 4 cut(s) 24, 117, 120, 303
GsuI CTGGAG 1 cut(s) 204
Hin1II CATG 2 cut(s) 84, 272
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 6 cut(s) 47, 80, 84, 119, 180, 216
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 128, 302, 308
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 84, 272
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 5 cut(s) 168, 246, 273, 309, 330
Lsp1109I GCAGC 3 cut(s) 103, 131, 289
LweI GCATC 2 cut(s) 254, 310
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 1 cut(s) 171
MnlI CCTC 6 cut(s) 24, 72, 85, 140, 267, 343
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 29, 128, 302, 308
NcoI CCATGG 1 cut(s) 268
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 84, 272
NlaIV GGNNCC 2 cut(s) 187, 274
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 4 cut(s) 25, 118, 121, 304
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 187, 274
PstI CTGCAG 1 cut(s) 121
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 24, 117, 120, 303
Sau3AI GATC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 261
SetI ASST 8 cut(s) 64, 72, 118, 151, 167, 214, 223, 354
SfaNI GCATC 2 cut(s) 254, 310
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SphI GCATGC 1 cut(s) 84
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 196, 268
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 279
TauI GCSGC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 187
TseI GCWGC 3 cut(s) 116, 119, 302
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 216
XceI RCATGY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.