Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001334

Physical Location & Seq

Genomic Coordinates Forward (+)

893485 .. 895562

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1013800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCAATGGAGACGCGAGTTCTCATTGTGGTGGCCGTGGTGGCTATGTTTATATGCCTTCCCTCCGCAGCATACGCAGCCGAGGGAACAGCCACTTATTATACACCTCCTTATGTTCCATCCTCATGCAACGGATACCAAAATGATGGAGTGATGATAGCAGCAGCAAGCGATGCCATTTGGGGCAACAGAGCTGCGTGTGGAAGAAGGTACAGTGTGACATGTATCGGAGCCACCAACCAAGGTGTGCCACAGCCTTGCAAGGGGAATAGCGTTGTCGTTAAAATTGTGGATTACTGTCCTCCTGGATGCCGAGGAACCATCGATCTCTCTCAAGAAGCCTTTGCTGCAATTGCTAACCCCGACGCGGGAAAAATCAAGATTCGTTATACCCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

134

Amino Acids

13.99

Weight (kDa)

8.16

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	54 - 130	3.6e-20	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30380 AT4G30380
fragaria_vesca	FvH4_4g09540 FvH4_6g06300
malus_domestica	MD02G1013800.v1.1 MD11G1210900.v1.1
prunus_persica	Prupe.1G065400_v2.0.a1 Prupe.1G096800_v2.0.a1 Prupe.1G096900_v2.0.a1 Prupe.1G097000_v2.0.a1
pyrus_communis	pycom02g01290 pycom02g01370
rosa_chinensis	RchiOBHm_Chr4g0404821 RchiOBHm_Chr4g0404841 RchiOBHm_Chr4g0404861 RchiOBHm_Chr7g0222801 RchiOBHm_Chr7g0224401
rosa_laevigata	RLG00000001898 RLG00000008898 RLG00000008902
rosa_multiflora	Rmu_sc0001179.1_g000019 Rmu_sc0001179.1_g000029 Rmu_sc0002881.1_g000004 Rmu_sc0006366.1_g000016
rosa_roxburghii	Rroxscaffold_3G00234800 Rroxscaffold_3G00234820 Rroxscaffold_5G00348980 Rroxscaffold_5G00348990 Rroxscaffold_5G00349000
rosa_rugosa	Rorug04G0049300 Rorug04G0049400 Rorug04G0049600 Rorug07G0222800
rosa_samantha	Rh4AG125100 Rh4AG125300 Rh4AG333700 Rh4BG119200 Rh4BG119400 Rh4CG133200 Rh4CG133400 Rh4CG133500 Rh4DG119100 Rh7AG356900 Rh7AG380500 Rh7BG359100 Rh7CG374300 Rh7CG399900 Rh7DG351300 Rh7DG368800
rosa_wichuraiana	Rw4G010140 Rw4G010150 Rw4G010160 Rw7G030270 Rw7G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	16, 368
AciI	CCGC	2 cut(s)	66, 368
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	263, 367, 368
AflIII	ACRYGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	304, 393
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	68, 77, 161, 164, 194, 347
BbvI	GCAGC	6 cut(s)	80, 89, 173, 176, 181, 334
BccI	CCATC	3 cut(s)	127, 140, 329
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	306, 395
BciVI	GTATCC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	6 cut(s)	69, 78, 162, 165, 195, 348
BlsI	GCNGC	6 cut(s)	70, 79, 163, 166, 196, 349
Bme1390I	CCNGG	2 cut(s)	306, 395
BmiI	GGNNCC	2 cut(s)	232, 319
BmrFI	CCNGG	2 cut(s)	306, 395
BmsI	GCATC	2 cut(s)	163, 299
BpuEI	CTTGAG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	5 cut(s)	36, 81, 241, 313, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 367, 368
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	306, 395
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	36, 81, 241, 313, 393
BseGI	GGATG	2 cut(s)	119, 314
BseLI	CCNNNNNNNGG	3 cut(s)	263, 367, 368
BseMI	GCAATG	1 cut(s)	12
BseXI	GCAGC	6 cut(s)	80, 89, 173, 176, 181, 334
Bsh1236I	CGCG	2 cut(s)	16, 368
BshFI	GGCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	324
BslI	CCNNNNNNNGG	3 cut(s)	263, 367, 368
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	66, 368
BspANI	GGCC	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	16, 368
BspLI	GGNNCC	2 cut(s)	232, 319
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	5 cut(s)	36, 81, 241, 313, 393
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	306, 395
Bst4CI	ACNGT	2 cut(s)	215, 299
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	119, 314
BstFNI	CGCG	2 cut(s)	16, 368
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 74, 77, 173, 347, 353
BstNI	CCWGG	2 cut(s)	306, 395
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	304, 393
BstUI	CGCG	2 cut(s)	16, 368
BstV1I	GCAGC	6 cut(s)	80, 89, 173, 176, 181, 334
BstXI	CCANNNNNNTGG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	119, 314
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	22, 374
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	126, 222
CviJI	RGCY	8 cut(s)	35, 44, 80, 92, 194, 233, 256, 341
CviKI_1	RGCY	8 cut(s)	35, 44, 80, 92, 194, 233, 256, 341
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	304, 393
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	2 cut(s)	129, 225
FaiI	YATR	9 cut(s)	47, 53, 55, 73, 102, 114, 127, 223, 390
FatI	CATG	2 cut(s)	125, 221
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	6 cut(s)	69, 78, 162, 165, 195, 348
FokI	GGATG	2 cut(s)	106, 321
Fsp4HI	GCNGC	6 cut(s)	69, 78, 162, 165, 195, 348
GluI	GCNGC	6 cut(s)	69, 78, 162, 165, 195, 348
HaeIII	GGCC	1 cut(s)	35
HgaI	GACGC	2 cut(s)	22, 374
Hin1II	CATG	2 cut(s)	129, 225
HinfI	GANTC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	335, 379
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	68, 201
HpyCH4III	ACNGT	2 cut(s)	215, 299
HpyCH4V	TGCA	3 cut(s)	129, 261, 350
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 74, 77, 173, 347, 353
Hsp92II	CATG	2 cut(s)	129, 225
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	291, 318, 380
Lsp1109I	GCAGC	6 cut(s)	80, 89, 173, 176, 181, 334
LweI	GCATC	2 cut(s)	163, 299
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	2 cut(s)	285, 351
MnlI	CCTC	6 cut(s)	73, 76, 117, 133, 308, 312
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	29, 124
MspR9I	CCNGG	2 cut(s)	306, 395
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	2 cut(s)	306, 395
MvnI	CGCG	2 cut(s)	16, 368
MwoI	GCNNNNNNNGC	6 cut(s)	41, 74, 77, 173, 347, 353
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	129, 225
NlaIV	GGNNCC	2 cut(s)	232, 319
NmeAIII	GCCGAG	2 cut(s)	106, 338
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	225
PciI	ACATGT	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	382
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	70, 79, 163, 166, 196, 349
PscI	ACATGT	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	304, 393
PspGI	CCWGG	2 cut(s)	304, 393
PspN4I	GGNNCC	2 cut(s)	232, 319
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	29, 124
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	6 cut(s)	69, 78, 162, 165, 195, 348
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	306, 395
SetI	ASST	5 cut(s)	109, 196, 212, 247, 399
SfaNI	GCATC	2 cut(s)	163, 299
SmiMI	CAYNNNNRTG	2 cut(s)	29, 124
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	285, 351
SsiI	CCGC	2 cut(s)	66, 368
StyD4I	CCNGG	2 cut(s)	304, 393
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	215, 299
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	285, 351
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	6 cut(s)	68, 77, 161, 164, 194, 347
Tsp45I	GTSAC	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	220
XceI	RCATGY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.