Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Forward (+)

4508406 .. 4514666

Gene Structure 6261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGATCTTGCTAAGTTTCTGTGTTGGATTGTTTTGCTACTGGGAATCTCACTCGTAGAATCAAGGTACATGGTCTACAATACTTCACATACCATTGTTCCTGGAAAACTTAATGTCCATGTGGTTCCTCATTCTCACGATGATGTTGGTTGGCTCAAGACCGTTGACCAGTACTATGTTGGCTCCAACAACTCTATCCAGGTTGCTTGTGTTCAAAATGTACTGGATTCAATTGTTCCTGCGCTGTTGGCTGATAAGAATCGCAAATTCATTTATGTTGAACAGGCGTTTTTTCAGCGGTGGTGGAATGAACAAAGTGAGGAGATTAAGCGTATTGTGAAAGAACTTATACACTCAGGCCAACTAGAGCTCATAAATGGTGGTATGTGTATGCATGATGAAGCAGCACCACACTATATAGATATGATTGATCAGACAACCCTCGGGCATCGATTCATTATCAGAGAGTTCAATGTGACTCCAAGAATCGGTTGGCAGATTGATCCCTTTGGACATTCTGCAGTGCAGGCTTACTTGCTAGGCGCAGAAGTTGGCTTCGACTCAGTCTTTTTTGGCCGGATAGATTACCAGGACAGGGAGAAGCGTTATAAAGAGAAGACTCTTGAAGTTATCTGGCGGGGCTCTAAGAGTCTCGGTTCTTCTTCACAGATTTTTGCCGGTGCTTTCCCTACGAACTACGAACCTCCACCTGGTGGCTTCTACTATGAAATCACCGATGATTCCCCCGTTGTCCAAGATGATCCTGACCTGTTTGATTACAATGTTCAAGAGCGAGTGAATGCCTTTGTAGCTGCAGCTTTGGATCAGGCCAACATTACTCGAATAAATCACATCATGTTTACCATGGGAACAGATTTCAGGTACCAATATGCCCACACCTGGTATCGACAAATGGACAAGCTTATTCATTATGTTAACCTCGATGGGCGTGTCAATGCTTTCTACTCTACCCCTTCCATATATACAGATGCAAAACACGCGGCAAATGAGGCTTGGCCCCTGAAAACAGAGGACTATTTCCCTTATGCAGACCGTATAAATGCTTATTGGACTGGATATTTTACAAGTAGGCCAGCACTTAAGCGTTATGTCAGAGTGATGAGTGCCTACTACTTGGCGGCAAGGCAACTTGAGTTTTTCAAAGGGAGAAGTCAGAAGGGTCCGAATACAGATTCGTTAGCAGATGCACTAGCAATTGCTCAACATCACGACGCTGTTTCTGGTACGTCGAAACAGCATGTGGCTAATGATTATGCAAAACGACTAGCAATAGGCTATGTGGAGGCTGAGAGTGTGGTTGCTACTTCTCTTGCTCATCTGACTAAAGTAGATCCCACCCTGAATCCAACCTTCCAACAGTGTTTGTTACTTAACATAAGTTACTGTCCCTCAAGCGAAGTCAACTTATCCGATGGGAAAAGTTTGATCGTATTGGCTTATAACCCACTAGGATGGAAGCGAGTGGACATTGTCCGGCTTCCTGTTGTGGGCGGAGACGTTTCGGTACATGACTCTGAGGGACACGAAGTTGAGTCTCAACTTGTTCCATTTACTGATGAATATGTGGCCTTAAGGAAATATCATGTAGAGGCATACTTAGGTCAAAGCCCTACACAGGTGCCAAAGTATTGGCTTGTGTTTTCAGTAACTGTGCCTCCTCTTGGCTTCACTACTTACACTATCTCCACTGCTAAGAAAACAGATGGATATTCTAGCAAATCATACGTCTCCAATATCCTAAAAGGCGAACAGTCAATAATTAACATTGGTCATGGGCATCTGAAGCTTAGTTTTTCCACTGATCAAGGGACAGCAATCAATTATGTTAACGGCAGAACCTCGATGACAGAACCAGTCAAACAGACATTTAGCTACTACTCTGCATACAATGGATCAAATGACAAAGAACCTCTTATACCTCAAAACTCGGGTGCGTATGTTTTCCGTCCAAATGGTACATTCCCCATCAATCCGGAAGGACAGGTTCCTTTGACTGTTATACATGGGCCGCTAGTGGACGAAGTACACCAACAGATTAATCCATGGATATCTCAGATCACTAGAGTTTATAAGGGCAAGGAGCATGTGGAAGTTGAATTTATTGTTGGTAATATACCAATTGATGATGGAATTGGCAAAGAAGTAGTAACCCAGATCTCAAGTTCCCTGAAAAGCAATAAAACTTTCTACACGGATTCAAGTGGACGTGATTATATCAAAAGGATCCGTGATTACAGGTCAGACTGGAAACTAGATGTCAACCAACCTATTGCAGGAAATTATTACCCGATAAATCATGGAATTTACTTGCAAGACAGTAAGAAGGAATTCTCAGTGATGGTGGACAGAGCCTTCGGGGGGTCGAGCATAGTGGACGGACAAGTTGAGCTAATGCTTCATAGGAGACTGCTCCTCGATGACTCCAGGGGTGTAGCAGAAAATCTAAATGAGACAGTGTGCGTTCAAGACAAGTGTACTGGGCTAACTATCCAAGGAAAATATTACTATAGAATTGATCCATATGGAGAAGGTGCAAAATGGAGACGTACATTCGGACAAGAAATCTACTCGCCACTCCTCTTGGCTTTTGCTCAACAGGATGATGGAAAGCCGATGAGTTTTGGTGCAGCATCATTCTCCGGGATTGATCCATCGTACAGTCTGCCTGACAATGTGGCACTTCTGACTCTGCAGGAACTGGATGATGGAAACGTGCTCCTGCGTCTAGCTCATCTTTATGAGGTGGAAGAGGACAAGGAACTATCAGGAGTAGCAAGCGTGGAACTCAAAAAGCTTTTTCCTGGAAAGAAGATCGGGAAATTGACGGAGATGAGCCTATCAGCAAATCAAGAAAGAAGCACGATGGAGAAGAAGAGGTTGGTGTGGAAAGTAGAAGGTGAAGGATCTTATGGAGAGGAGAAGAAGGCAAAGAGAGGGAGAGAAATTGATCCAAGAAAGCTGGAGATGGAGCTTTACCCGATGGAGATTAGGACCGTGTTGATCCACTTAGAGCTTCCATCTTCTCATTCTCGCATAAACAGATTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005774 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009505 GO:0009987 GO:0015923 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030312 GO:0031090 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1024

Amino Acids

115.9

Weight (kDa)

6.0

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	38 - 350	1.2e-83	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	355 - 447	2.3e-22	Alpha mannosidase middle domain
Laman-like_dom	PF21260	517 - 568	4.6e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	596 - 816	2.5e-48	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	609, 1461, 2091
Acc65I	GGTACC	1 cut(s)	882
AccB1I	GGYRCC	2 cut(s)	882, 1639
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	1001
AccIII	TCCGGA	1 cut(s)	1993
AciI	CCGC	6 cut(s)	298, 637, 1001, 1139, 1512, 2030
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	4 cut(s)	266, 2117, 2322, 2348
AcuI	CTGAAG	1 cut(s)	1823
AdeI	CACNNNGTG	1 cut(s)	713
AflII	CTTAAG	2 cut(s)	1100, 1591
AjiI	CACGTC	1 cut(s)	2228
AjnI	CCWGG	7 cut(s)	100, 198, 588, 709, 899, 2444, 2821
AjuI	GAANNNNNNNTTGG	4 cut(s)	2109, 2141, 2882, 2914
Alw21I	GWGCWC	2 cut(s)	372, 2739
Alw26I	GTCTC	7 cut(s)	656, 1509, 1560, 1753, 2419, 2465, 2557
AlwNI	CAGNNNCTG	2 cut(s)	1670, 2719
Ama87I	CYCGRG	2 cut(s)	443, 1948
Aor13HI	TCCGGA	1 cut(s)	1993
AoxI	GGCC	7 cut(s)	358, 574, 828, 1016, 1091, 1587, 2027
ApeKI	GCWGC	4 cut(s)	404, 812, 815, 2648
ApoI	RAATTY	4 cut(s)	266, 2117, 2322, 2348
ArsI	GACNNNNNNTTYG	4 cut(s)	1731, 1763, 2357, 2389
AseI	ATTAAT	1 cut(s)	2058
Asp700I	GAANNNNTTC	1 cut(s)	2348
Asp718I	GGTACC	1 cut(s)	882
AspLEI	GCGC	2 cut(s)	244, 545
AspS9I	GGNCC	4 cut(s)	1017, 1181, 2027, 3012
AsuC2I	CCSGG	1 cut(s)	2662
AsuHPI	GGTGA	2 cut(s)	724, 2930
AvaI	CYCGRG	2 cut(s)	443, 1948
AvaII	GGWCC	2 cut(s)	1181, 3012
BamHI	GGATCC	1 cut(s)	2244
BanI	GGYRCC	2 cut(s)	882, 1639
BanII	GRGCYC	2 cut(s)	372, 644
BbsI	GAAGAC	1 cut(s)	623
Bbv12I	GWGCWC	2 cut(s)	372, 2739
BbvI	GCAGC	4 cut(s)	416, 799, 827, 2660
BceAI	ACGGC	1 cut(s)	1867
BciT130I	CCWGG	7 cut(s)	102, 200, 590, 711, 901, 2446, 2823
BclI	TGATCA	2 cut(s)	430, 1822
BcnI	CCSGG	1 cut(s)	2662
BcoDI	GTCTC	7 cut(s)	656, 1509, 1560, 1753, 2419, 2465, 2557
BfmI	CTRYAG	4 cut(s)	519, 813, 2527, 2711
BfrI	CTTAAG	2 cut(s)	1100, 1591
BglII	AGATCT	1 cut(s)	2175
BisI	GCNGC	7 cut(s)	405, 813, 816, 1002, 1140, 2030, 2649
BlsI	GCNGC	7 cut(s)	406, 814, 817, 1003, 1141, 2031, 2650
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	8 cut(s)	102, 200, 590, 711, 901, 2446, 2662, 2823
Bme18I	GGWCC	2 cut(s)	1181, 3012
BmeT110I	CYCGRG	2 cut(s)	443, 1948
BmgBI	CACGTC	1 cut(s)	2228
BmgT120I	GGNCC	4 cut(s)	1017, 1181, 2027, 3012
BmiI	GGNNCC	8 cut(s)	126, 184, 884, 1019, 1182, 1641, 2007, 2246
BmrFI	CCNGG	8 cut(s)	102, 200, 590, 711, 901, 2446, 2662, 2823
BmrI	ACTGGG	2 cut(s)	50, 2508
BmsI	GCATC	6 cut(s)	457, 979, 1195, 1807, 2660, 3058
BmuI	ACTGGG	2 cut(s)	50, 2508
BpiI	GAAGAC	1 cut(s)	623
BpmI	CTGGAG	2 cut(s)	2428, 3002
BpuEI	CTTGAG	4 cut(s)	140, 1172, 1396, 2164
BpuMI	CCSGG	1 cut(s)	2662
Bsa29I	ATCGAT	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	5 cut(s)	442, 864, 2063, 2445, 2512
BsaWI	WCCGGW	1 cut(s)	1993
BsaXI	ACNNNNNCTCC	4 cut(s)	1660, 1688, 1690, 1718
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	8 cut(s)	45, 169, 228, 1078, 1874, 2270, 2503, 2724
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	1993
BseBI	CCWGG	7 cut(s)	102, 200, 590, 711, 901, 2446, 2823
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	5 cut(s)	442, 864, 2063, 2445, 2512
BseGI	GGATG	3 cut(s)	1478, 2626, 2728
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	6 cut(s)	369, 576, 1299, 1527, 2087, 2367
BseNI	ACTGG	8 cut(s)	45, 169, 228, 1078, 1874, 2270, 2503, 2724
BseRI	GAGGAG	5 cut(s)	335, 1668, 2423, 2588, 2951
BseXI	GCAGC	4 cut(s)	416, 799, 827, 2660
BsgI	GTGCAG	2 cut(s)	545, 2667
Bsh1236I	CGCG	1 cut(s)	1001
BshFI	GGCC	7 cut(s)	360, 576, 830, 1018, 1093, 1589, 2029
BshNI	GGYRCC	2 cut(s)	882, 1639
BshVI	ATCGAT	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	372, 2739
BsiHKCI	CYCGRG	2 cut(s)	443, 1948
BsiSI	CCGG	5 cut(s)	577, 678, 1495, 1994, 2661
BslFI	GGGAC	3 cut(s)	1392, 1554, 1843
BsmAI	GTCTC	7 cut(s)	656, 1509, 1560, 1753, 2419, 2465, 2557
BsmBI	CGTCTC	3 cut(s)	1509, 1753, 2557
BsmFI	GGGAC	3 cut(s)	1392, 1554, 1843
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	7 cut(s)	360, 576, 830, 1018, 1093, 1589, 2029
BsoBI	CYCGRG	2 cut(s)	443, 1948
Bsp1286I	GDGCHC	3 cut(s)	372, 644, 2739
Bsp13I	TCCGGA	1 cut(s)	1993
Bsp19I	CCATGG	2 cut(s)	864, 2063
BspACI	CCGC	6 cut(s)	298, 637, 1001, 1139, 1512, 2030
BspANI	GGCC	7 cut(s)	360, 576, 830, 1018, 1093, 1589, 2029
BspCNI	CTCAG	6 cut(s)	368, 575, 1300, 1528, 2086, 2366
BspDI	ATCGAT	1 cut(s)	451
BspEI	TCCGGA	1 cut(s)	1993
BspFNI	CGCG	1 cut(s)	1001
BspLI	GGNNCC	8 cut(s)	126, 184, 884, 1019, 1182, 1641, 2007, 2246
BspMAI	CTGCAG	3 cut(s)	523, 817, 2715
BspT107I	GGYRCC	2 cut(s)	882, 1639
BspTI	CTTAAG	2 cut(s)	1100, 1591
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	8 cut(s)	45, 169, 228, 1078, 1874, 2270, 2503, 2724
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	5 cut(s)	442, 864, 2063, 2445, 2512
BssT1I	CCWWGG	3 cut(s)	864, 2063, 2512
Bst2UI	CCWGG	7 cut(s)	102, 200, 590, 711, 901, 2446, 2823
Bst6I	CTCTTC	2 cut(s)	2763, 2888
BstAFI	CTTAAG	2 cut(s)	1100, 1591
BstC8I	GCNNGC	3 cut(s)	528, 1095, 2797
BstDSI	CCRYGG	2 cut(s)	864, 2063
BstENI	CCTNNNNNAGG	1 cut(s)	2292
BstF5I	GGATG	3 cut(s)	1478, 2626, 2728
BstFNI	CGCG	1 cut(s)	1001
BstHHI	GCGC	2 cut(s)	244, 545
BstMAI	GTCTC	7 cut(s)	656, 1509, 1560, 1753, 2419, 2465, 2557
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 527, 809, 998, 1010, 1804
BstNI	CCWGG	7 cut(s)	102, 200, 590, 711, 901, 2446, 2823
BstNSI	RCATGY	2 cut(s)	1262, 2108
BstSCI	CCNGG	8 cut(s)	100, 198, 588, 709, 899, 2444, 2660, 2821
BstSFI	CTRYAG	4 cut(s)	519, 813, 2527, 2711
BstUI	CGCG	1 cut(s)	1001
BstV1I	GCAGC	4 cut(s)	416, 799, 827, 2660
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	5 cut(s)	4, 1351, 2175, 2244, 2924
BstXI	CCANNNNNNTGG	2 cut(s)	1473, 1650
BstYI	RGATCY	5 cut(s)	4, 1351, 2175, 2244, 2924
Bsu15I	ATCGAT	1 cut(s)	451
BsuRI	GGCC	7 cut(s)	360, 576, 830, 1018, 1093, 1589, 2029
BsuTUI	ATCGAT	1 cut(s)	451
BtgI	CCRYGG	2 cut(s)	864, 2063
BtrI	CACGTC	1 cut(s)	2228
BtsCI	GGATG	3 cut(s)	1478, 2626, 2728
BtsI	GCAGTG	2 cut(s)	528, 1707
BtsIMutI	CAGTG	6 cut(s)	528, 1385, 1707, 1818, 2361, 2481
Cac8I	GCNNGC	3 cut(s)	528, 1095, 2797
CaiI	CAGNNNCTG	2 cut(s)	1670, 2719
CfoI	GCGC	2 cut(s)	244, 545
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	4 cut(s)	1017, 1181, 2027, 3012
ClaI	ATCGAT	1 cut(s)	451
CseI	GACGC	2 cut(s)	1241, 2732
CsiI	ACCWGGT	2 cut(s)	709, 899
CspCI	CAANNNNNGTGG	2 cut(s)	2583, 2618
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	2763, 2888
EarI	CTCTTC	2 cut(s)	2763, 2888
EciI	GGCGGA	1 cut(s)	1527
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	864, 2063, 2512
Eco24I	GRGCYC	2 cut(s)	372, 644
Eco32I	GATATC	1 cut(s)	2070
Eco47I	GGWCC	2 cut(s)	1181, 3012
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	1823
Eco88I	CYCGRG	2 cut(s)	443, 1948
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	2292
EcoRI	GAATTC	1 cut(s)	2348
EcoRII	CCWGG	7 cut(s)	100, 198, 588, 709, 899, 2444, 2821
EcoRV	GATATC	1 cut(s)	2070
EcoT14I	CCWWGG	3 cut(s)	864, 2063, 2512
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	372, 644
ErhI	CCWWGG	3 cut(s)	864, 2063, 2512
Esp3I	CGTCTC	3 cut(s)	1509, 1753, 2557
FalI	AAGNNNNNCTT	2 cut(s)	1917, 1949
FaqI	GGGAC	3 cut(s)	1392, 1554, 1843
FauI	CCCGC	1 cut(s)	630
FauNDI	CATATG	1 cut(s)	2542
FbaI	TGATCA	2 cut(s)	430, 1822
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	7 cut(s)	405, 813, 816, 1002, 1140, 2030, 2649
FokI	GGATG	3 cut(s)	1485, 2633, 2735
FriOI	GRGCYC	2 cut(s)	372, 644
Fsp4HI	GCNGC	7 cut(s)	405, 813, 816, 1002, 1140, 2030, 2649
GlaI	GCGC	2 cut(s)	243, 544
GluI	GCNGC	7 cut(s)	405, 813, 816, 1002, 1140, 2030, 2649
GsuI	CTGGAG	2 cut(s)	2428, 3002
HaeIII	GGCC	7 cut(s)	360, 576, 830, 1018, 1093, 1589, 2029
HapII	CCGG	5 cut(s)	577, 678, 1495, 1994, 2661
HgaI	GACGC	2 cut(s)	1241, 2732
HhaI	GCGC	2 cut(s)	244, 545
Hin6I	GCGC	2 cut(s)	242, 543
HinP1I	GCGC	2 cut(s)	242, 543
HincII	GTYRAC	5 cut(s)	166, 937, 1423, 1849, 2281
HindII	GTYRAC	5 cut(s)	166, 937, 1423, 1849, 2281
HindIII	AAGCTT	3 cut(s)	920, 1805, 2813
HpaI	GTTAAC	2 cut(s)	937, 1849
HpaII	CCGG	5 cut(s)	577, 678, 1495, 1994, 2661
HphI	GGTGA	2 cut(s)	724, 2930
Hpy99I	CGWCG	2 cut(s)	1235, 1252
HpyCH4IV	ACGT	6 cut(s)	1247, 1518, 1746, 2227, 2566, 2733
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 527, 809, 998, 1010, 1804
HpySE526I	ACGT	6 cut(s)	1247, 1518, 1746, 2227, 2566, 2733
HspAI	GCGC	2 cut(s)	242, 543
Kpn2I	TCCGGA	1 cut(s)	1993
KpnI	GGTACC	1 cut(s)	886
Ksp22I	TGATCA	2 cut(s)	430, 1822
KspAI	GTTAAC	2 cut(s)	937, 1849
LmnI	GCTCC	5 cut(s)	188, 2101, 2436, 2742, 2989
Lsp1109I	GCAGC	4 cut(s)	416, 799, 827, 2660
LweI	GCATC	6 cut(s)	457, 979, 1195, 1807, 2660, 3058
MabI	ACCWGGT	2 cut(s)	709, 899
MaeII	ACGT	6 cut(s)	1247, 1518, 1746, 2227, 2566, 2733
MaeIII	GTNAC	5 cut(s)	475, 1386, 1400, 1666, 2167
MboII	GAAGA	9 cut(s)	628, 651, 654, 2780, 2842, 2902, 2905, 2953, 3033
MfeI	CAATTG	3 cut(s)	231, 1215, 2139
MflI	RGATCY	5 cut(s)	4, 1351, 2175, 2244, 2924
MhlI	GDGCHC	3 cut(s)	372, 644, 2739
MlyI	GAGTC	8 cut(s)	472, 554, 613, 658, 1526, 1562, 2435, 2701
MmeI	TCCRAC	4 cut(s)	5, 210, 1391, 1399
Mph1103I	ATGCAT	1 cut(s)	396
MroI	TCCGGA	1 cut(s)	1993
MroXI	GAANNNNTTC	1 cut(s)	2348
MseI	TTAA	9 cut(s)	111, 327, 936, 1101, 1392, 1592, 1782, 1848, 2058
MslI	CAYNNNNRTG	3 cut(s)	141, 1471, 2757
MspA1I	CMGCKG	1 cut(s)	298
MspCI	CTTAAG	2 cut(s)	1100, 1591
MspI	CCGG	5 cut(s)	577, 678, 1495, 1994, 2661
MspR9I	CCNGG	8 cut(s)	102, 200, 590, 711, 901, 2446, 2662, 2823
MunI	CAATTG	3 cut(s)	231, 1215, 2139
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	7 cut(s)	102, 200, 590, 711, 901, 2446, 2823
MvnI	CGCG	1 cut(s)	1001
MwoI	GCNNNNNNNGC	6 cut(s)	248, 527, 809, 998, 1010, 1804
NciI	CCSGG	1 cut(s)	2662
NcoI	CCATGG	2 cut(s)	864, 2063
NdeI	CATATG	1 cut(s)	2542
NlaIV	GGNNCC	8 cut(s)	126, 184, 884, 1019, 1182, 1641, 2007, 2246
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	1262, 2108
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	2348
PflFI	GACNNNGTC	2 cut(s)	563, 1490
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	3 cut(s)	100, 2660, 2821
PkrI	GCNGC	7 cut(s)	406, 814, 817, 1003, 1141, 2031, 2650
PleI	GAGTC	8 cut(s)	472, 554, 613, 657, 1526, 1561, 2435, 2701
PpsI	GAGTC	8 cut(s)	472, 554, 613, 657, 1526, 1561, 2435, 2701
PshBI	ATTAAT	1 cut(s)	2058
PsiI	TTATAA	3 cut(s)	609, 1461, 2091
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	7 cut(s)	100, 198, 588, 709, 899, 2444, 2821
PspGI	CCWGG	7 cut(s)	100, 198, 588, 709, 899, 2444, 2821
PspN4I	GGNNCC	8 cut(s)	126, 184, 884, 1019, 1182, 1641, 2007, 2246
PspPI	GGNCC	4 cut(s)	1017, 1181, 2027, 3012
PsrI	GAACNNNNNNTAC	2 cut(s)	1920, 1952
PstI	CTGCAG	3 cut(s)	523, 817, 2715
PstNI	CAGNNNCTG	2 cut(s)	1670, 2719
PsuI	RGATCY	5 cut(s)	4, 1351, 2175, 2244, 2924
PsyI	GACNNNGTC	2 cut(s)	563, 1490
RseI	CAYNNNNRTG	3 cut(s)	141, 1471, 2757
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	9 cut(s)	111, 327, 936, 1101, 1392, 1592, 1782, 1848, 2058
SatI	GCNGC	7 cut(s)	405, 813, 816, 1002, 1140, 2030, 2649
Sau96I	GGNCC	4 cut(s)	1017, 1181, 2027, 3012
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	8 cut(s)	472, 554, 613, 658, 1526, 1562, 2435, 2701
ScrFI	CCNGG	8 cut(s)	102, 200, 590, 711, 901, 2446, 2662, 2823
SduI	GDGCHC	3 cut(s)	372, 644, 2739
SexAI	ACCWGGT	2 cut(s)	709, 899
SfaNI	GCATC	6 cut(s)	457, 979, 1195, 1807, 2660, 3058
SfcI	CTRYAG	4 cut(s)	519, 813, 2527, 2711
SinI	GGWCC	2 cut(s)	1181, 3012
SmiMI	CAYNNNNRTG	3 cut(s)	141, 1471, 2757
SmlI	CTYRAG	6 cut(s)	155, 1100, 1151, 1411, 1591, 2179
SmoI	CTYRAG	6 cut(s)	155, 1100, 1151, 1411, 1591, 2179
SsiI	CCGC	6 cut(s)	298, 637, 1001, 1139, 1512, 2030
SspI	AATATT	1 cut(s)	2522
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	8 cut(s)	100, 198, 588, 709, 899, 2444, 2660, 2821
StyI	CCWWGG	3 cut(s)	864, 2063, 2512
TaiI	ACGT	6 cut(s)	1250, 1521, 1749, 2230, 2569, 2736
TaqI	TCGA	9 cut(s)	451, 558, 841, 907, 942, 1250, 1862, 2384, 2436
TatI	WGTACW	4 cut(s)	171, 220, 2044, 2495
TauI	GCSGC	3 cut(s)	1004, 1142, 2032
Tru1I	TTAA	9 cut(s)	111, 327, 936, 1101, 1392, 1592, 1782, 1848, 2058
Tru9I	TTAA	9 cut(s)	111, 327, 936, 1101, 1392, 1592, 1782, 1848, 2058
TscAI	CASTG	6 cut(s)	528, 1385, 1714, 1825, 2361, 2481
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	4 cut(s)	404, 812, 815, 2648
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	8 cut(s)	259, 324, 414, 445, 741, 917, 1593, 2408
TspGWI	ACGGA	5 cut(s)	1955, 2228, 2237, 2412, 2861
TspRI	CASTG	6 cut(s)	528, 1385, 1714, 1825, 2361, 2481
Tth111I	GACNNNGTC	2 cut(s)	563, 1490
Van91I	CCANNNNNTGG	1 cut(s)	713
Vha464I	CTTAAG	2 cut(s)	1100, 1591
VpaK11BI	GGWCC	2 cut(s)	1181, 3012
VspI	ATTAAT	1 cut(s)	2058
XagI	CCTNNNNNAGG	1 cut(s)	2292
XapI	RAATTY	4 cut(s)	266, 2117, 2322, 2348
XceI	RCATGY	2 cut(s)	1262, 2108
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 489
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	2348
ZrmI	AGTACT	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.