Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

81659449 .. 81675098

Gene Structure 15650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG647400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3099 bp

ATGGCTTCTTCTACTGCGTGGGCGATGCTGCTGGTGGCGGTCTTATTGGCACAGTTGCTGGCCGCAAGATCGGAGTACATAGCTTACAATACGACGGCGGGGATCGTCCCGGAGAAACTCAACGTTCATTTGGTTCCTCACTCTCACGACGACGTCGGGTGGCTTAAGACGGTGGACCAGTACTACGTGGGCGCCAACAATTCAATTCGAGGTGCTTGTGTACAGAACGTCATTGACTCTGTCATCTCTGCCTTATTGGAGGACAAGAATCGCAAGTTCATCTATGTTGAGATTGCATTCTTTCAGAGATGGTGGAGACAGCAAAGCCCTGCTATGAAGATCAAAGTCAAGGACCTGGTCAGCTCCGGTCAGCTCGAGTTCATAAATGGGGGCATGTGTATGCATGATGAAGCAGCTACGCATTATGTTGACATGATTGATCAGACCACTCTTGGGCATCGCTTTATTAAAACGGAATTCGATGTGACTCCAAGAATTGGATGGCAAATTGATCCTTTTGGACATTCGGCTGTCCAGGCCTACTTGTTGGGAGCACAAGTTGGATTCGACTCACTTTACTTTGGTCGAATAGATTACCAGGACAGGGAAAAACGCAAAAATGACAAGAGTCTGGAGTTTGTTTGGCAGGGTTCTAAGAGTCTCGGTTCATCTGCTGAGATTTTTTCTGGTGCTTTCCCTGAGAATTATGAACCTCCTTCTGGTTTCTATTTTGAAGTTAATGATAAATCCCCAATAGTCCAGGATGACATCACTTTGTTTGATTACAATGTTCAAGAACGAGTTAATGACTTTGTTGCTGCTGCAGTATCACAGGCTAACATAACTCGAACAAATCATATTATGTGGACCATGGGAACAGACTTCAAGTATCAGTATGCACACACCTGGTTCCGTCAAATGGACAAGCTCATTCATTATGTCAACAAGGATGGACGTGTTAATGCTCTGTACTCTACTCCTTCCATATATACTGATGCAAAATATGCTACAAATGAATCTTGGCCAATCAAGACTGGTGACTTCTTTCCTTATGCAGATCGCATTAATGCTTACTGGACAGGATACTTCACAAGCAGACCAGCCTTGAAACACTACGTTAGAACAATGAGTGGCTATTATTTGGCTGCTAGGCAACTAGAATTTTTTAAAGGAAGGAGTACTTCAGGGCCCAATACGGACTCATTGGCAGATGCCTTAGCAATTGCTCAACATCATGATGCTGTCACTGGTACAGAAAAGCAGCACGTTGCCAATGATTATGCAAAAAGATTGTCAATAGGATACATGGAGTCTGAGCAACTAGTTGCAACTTCACTTGCTCACTTGGTTGAGTCTGCATCATATACTGGATCTGGAAACCCAACTACAAAGTTTCAACAGTGTCTACTTCTGAATATAAGCTATTGCCCTGCATCAGAAGTAACTTTGTCTCAGGGGAAAAAATTGATTGTCGTGGTGTACAATTCTCTTGGATGGAAGAGGGATGACACAGTCCGAATTCCTGTTATCAATGAAGATGTCATTGTTCATGATTCTGAGGGAAAAGCAATCGAGTCACAGCTTCTTCCTCTAGATGATGTCCATCTGGGCTTAAGGAACTACTATGTTAAGGCATACTTGGGTCAAACTCCAACAAAGACACCAAAGTATTGGCTTGTGTTTACAGTATCCGTACCACCACTTGGTTTTAGCACATACACTATCTCGGGTGCCGAAGGGGCAGGTGCTAGCTCAACCAGATCATCTGTATACACCTTTCAAAGCAGAGAAAAGTCGACTATTGAAGTTGGTCAAGGAAATGTGAAACTCTCTTTTTCCACAGATCAAGGCAAAATGACTAATTATGTCAATAGCAGAAGCTTGGTGGAAGAATCGGTTCAGCAGTCTTACAGCTTTTATAATGGGTATAATGGCAGTAATGATAAGGCTCCGCTGATTCCTCAGAATTCTGGGGCATATGTTTTCCGGCCTAATGGAACATTTCTCATAACACCCGAAGAAAAGGCTTCTTTGACTGTTATACGTGGACCAGTAATAGATGAAGTACATCAACAGATTAATTCGTGGATACATCAGATCACTAGACTTCACAAGGAAAAGGAGCATGTTGAAGTTGAGTTTATTGTTGGCCCTATACCTACTGATGATGGAATTGGAAAAGAAGTTGTAACTCAATTAGACACTGCCATGGCTACCAACAAAACGTTCTACACTGATTCTAATGGGCGTGATTTTATCAAAAGGATTCGCGACTATAGAACAGATTGGGACTTCAAAGTGAACCAACCTGTTGCTGGAAATTATTACCCAATTAATCTTGGGATTTACATGCAAGATAATAGGACAGAATTTTCACTTTTGGTGGATCGGTCACTAGGGGGATCCAGCACAGTGGATGGTCAGATAGAGCTGATGCTTCACAGGAGACTACTACTTGATGACTCAAGAGGTGTTGCCGAGGCTCTAAATGAAACTGTCTGTGTTTCCGATGAATGCACAGGACTAAGAGTCCTAGGGAAATTTTACTTCAGAATTGACCCCTTGGGAGATGGTGCTAAGTGGCGTCGTTCTTTTGGCCAGGAGATATATTCACCTCTTCTCCTAGCCTTTGCTGAACAGGATGGAGATAACTGGAAGAATTCTCATGCAACCACTTTTTCTGGGATTGATTCCTCGTATAGTTTACCTGATAATGTTGCTCTTATAACTCTTCAGGAGCTTGATGATGGAAAAATTCTCATTCGCTTAGCACATTTATACGAGGTTGGAGAGGACAAGGATTTTTCTGTAATGGCAAATGTAGAGCTGAAGAAGCTTTTCCCCAGGAAGAAGATTGGCAAAGCGACAGAAATGAACTTATCAGCTAATCAAGAAAGGACAGAAATGGAGAGAAAGAGACTGGTATGGAAAAAGGAAGGGGGCTCGTCAGGAACGGAAAAGGGTGTGAGGGGTGGACCTGTTGATCCTGCAAAACTAGTTGTGGAACTTGCCCCAATGGAAATCCGCACCTTTCTCATTGACTTGGAGCAGAAGTTCTTCCACCGCCGCCATCATCATCATGATGTATCTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1032

Amino Acids

116.36

Weight (kDa)

6.02

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	41 - 352	1.9e-83	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	357 - 449	3.3e-21	Alpha mannosidase middle domain
Laman-like_dom	PF21260	524 - 575	5.6e-12	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	604 - 823	8.8e-47	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	905 - 1011	1e-08	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1920, 2726
AarI	CACCTGC	1 cut(s)	1733
AatII	GACGTC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	1733
AccB1I	GGYRCC	2 cut(s)	191, 1730
AccB7I	CCANNNNNTGG	2 cut(s)	497, 1703
AccI	GTMKAC	3 cut(s)	1405, 1770, 1796
AccII	CGCG	1 cut(s)	2271
AciI	CCGC	7 cut(s)	38, 63, 98, 1952, 3025, 3064, 3067
AclI	AACGTT	2 cut(s)	123, 2225
AclWI	GGATC	7 cut(s)	110, 506, 1378, 2394, 2397, 2410, 2978
AcoI	YGGCCR	3 cut(s)	60, 1022, 2596
AcsI	RAATTY	8 cut(s)	476, 1160, 1518, 1966, 2369, 2540, 2659, 2754
AcuI	CTGAAG	4 cut(s)	1167, 2533, 2717, 2849
AcyI	GRCGYC	3 cut(s)	153, 192, 2584
AfaI	GTAC	9 cut(s)	77, 182, 222, 971, 1180, 1252, 1481, 1695, 2067
AfiI	CCNNNNNNNGG	7 cut(s)	453, 497, 604, 719, 919, 1703, 2315
AflII	CTTAAG	2 cut(s)	164, 1612
AflIII	ACRYGT	1 cut(s)	955
AhdI	GACNNNNNGTC	1 cut(s)	2528
AhlI	ACTAGT	2 cut(s)	1321, 2995
AjiI	CACGTC	1 cut(s)	956
AjnI	CCWGG	7 cut(s)	354, 534, 597, 759, 905, 2598, 2843
AjuI	GAANNNNNNNTTGG	2 cut(s)	2210, 2242
AloI	GAACNNNNNNTCC	2 cut(s)	3038, 3070
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	5 cut(s)	310, 665, 1455, 2440, 2911
AlwI	GGATC	7 cut(s)	110, 506, 1378, 2394, 2397, 2410, 2978
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	2 cut(s)	374, 1726
AoxI	GGCC	7 cut(s)	60, 537, 1022, 1187, 1988, 2149, 2596
ApaI	GGGCCC	1 cut(s)	1191
ApeKI	GCWGC	6 cut(s)	28, 413, 818, 821, 1145, 1261
ApoI	RAATTY	8 cut(s)	476, 1160, 1518, 1966, 2369, 2540, 2659, 2754
ArsI	GACNNNNNNTTYG	2 cut(s)	1277, 1309
AseI	ATTAAT	3 cut(s)	1065, 2079, 2334
Asp700I	GAANNNNTTC	3 cut(s)	1896, 2837, 3056
AspA2I	CCTAGG	1 cut(s)	2533
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	8 cut(s)	175, 352, 867, 1187, 1188, 2048, 2150, 2975
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	1049, 2604
AsuNHI	GCTAGC	1 cut(s)	1748
AvaI	CYCGRG	2 cut(s)	374, 1726
AvaII	GGWCC	5 cut(s)	175, 352, 867, 2048, 2975
AvrII	CCTAGG	1 cut(s)	2533
BaeGI	GKGCMC	1 cut(s)	1191
BalI	TGGCCA	2 cut(s)	1024, 2598
BamHI	GGATCC	1 cut(s)	2402
BanI	GGYRCC	2 cut(s)	191, 1730
BanII	GRGCYC	2 cut(s)	1191, 2945
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	6 cut(s)	15, 425, 805, 808, 1132, 1273
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	7 cut(s)	356, 536, 599, 761, 907, 2600, 2845
BciVI	GTATCC	4 cut(s)	1076, 1295, 1699, 2082
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	5 cut(s)	310, 665, 1455, 2440, 2911
BcuI	ACTAGT	2 cut(s)	1321, 2995
BfmI	CTRYAG	2 cut(s)	822, 2275
BfoI	RGCGCY	1 cut(s)	195
BfrI	CTTAAG	2 cut(s)	164, 1612
BfuAI	ACCTGC	1 cut(s)	1733
BfuI	GTATCC	4 cut(s)	1076, 1295, 1699, 2082
BglI	GCCNNNNNGGC	1 cut(s)	1739
BisI	GCNGC	8 cut(s)	29, 63, 414, 819, 822, 1146, 1262, 3067
BlnI	CCTAGG	1 cut(s)	2533
BlpI	GCTNAGC	1 cut(s)	2767
BlsI	GCNGC	8 cut(s)	30, 64, 415, 820, 823, 1147, 1263, 3068
BmcAI	AGTACT	2 cut(s)	182, 1180
Bme1390I	CCNGG	8 cut(s)	110, 356, 536, 599, 761, 907, 2600, 2845
Bme18I	GGWCC	5 cut(s)	175, 352, 867, 2048, 2975
BmeRI	GACNNNNNGTC	1 cut(s)	2528
BmeT110I	CYCGRG	2 cut(s)	374, 1726
BmgBI	CACGTC	1 cut(s)	956
BmgT120I	GGNCC	8 cut(s)	175, 352, 867, 1187, 1188, 2048, 2150, 2975
BmiI	GGNNCC	7 cut(s)	135, 193, 911, 1189, 1732, 1950, 2404
BmrFI	CCNGG	8 cut(s)	110, 356, 536, 599, 761, 907, 2600, 2845
BmsI	GCATC	8 cut(s)	15, 466, 985, 1201, 1228, 1367, 1442, 2424
BmtI	GCTAGC	1 cut(s)	1752
BoxI	GACNNNNGTC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	1216
Bpu1102I	GCTNAGC	1 cut(s)	2767
BpuEI	CTTGAG	1 cut(s)	2449
BpuMI	CCSGG	1 cut(s)	110
BsaAI	YACGTR	2 cut(s)	187, 2045
BsaBI	GATNNNNATC	1 cut(s)	1602
BsaHI	GRCGYC	3 cut(s)	153, 192, 2584
BsaJI	CCNNGG	6 cut(s)	870, 2208, 2478, 2533, 2562, 2843
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	6 cut(s)	543, 573, 2604, 2634, 3038, 3068
Bsc4I	CCNNNNNNNGG	7 cut(s)	453, 497, 604, 719, 919, 1703, 2315
Bse1I	ACTGG	8 cut(s)	178, 1039, 1079, 1252, 1372, 2051, 2657, 2925
Bse8I	GATNNNNATC	1 cut(s)	1602
BseBI	CCWGG	7 cut(s)	356, 536, 599, 761, 907, 2600, 2845
BseDI	CCNNGG	6 cut(s)	870, 2208, 2478, 2533, 2562, 2843
BseGI	GGATG	7 cut(s)	506, 769, 955, 1499, 1510, 2422, 2647
BseJI	GATNNNNATC	1 cut(s)	1602
BseLI	CCNNNNNNNGG	7 cut(s)	453, 497, 604, 719, 919, 1703, 2315
BseMII	CTCAG	6 cut(s)	666, 690, 1305, 1466, 1548, 1976
BseNI	ACTGG	8 cut(s)	178, 1039, 1079, 1252, 1372, 2051, 2657, 2925
BseSI	GKGCMC	1 cut(s)	1191
BseXI	GCAGC	6 cut(s)	15, 425, 805, 808, 1132, 1273
Bsh1236I	CGCG	1 cut(s)	2271
BshFI	GGCC	7 cut(s)	62, 539, 1024, 1189, 1990, 2151, 2598
BshNI	GGYRCC	2 cut(s)	191, 1730
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	2 cut(s)	374, 1726
BsiSI	CCGG	3 cut(s)	110, 366, 1987
BslFI	GGGAC	2 cut(s)	92, 2303
BslI	CCNNNNNNNGG	7 cut(s)	453, 497, 604, 719, 919, 1703, 2315
BsmAI	GTCTC	5 cut(s)	310, 665, 1455, 2440, 2911
BsmFI	GGGAC	2 cut(s)	92, 2303
BsmI	GAATGC	2 cut(s)	296, 2519
BsnI	GGCC	7 cut(s)	62, 539, 1024, 1189, 1990, 2151, 2598
BsoBI	CYCGRG	2 cut(s)	374, 1726
Bsp120I	GGGCCC	1 cut(s)	1187
Bsp1286I	GDGCHC	3 cut(s)	556, 1191, 2945
Bsp1407I	TGTACA	2 cut(s)	220, 1479
Bsp1720I	GCTNAGC	1 cut(s)	2767
Bsp19I	CCATGG	2 cut(s)	870, 2208
Bsp68I	TCGCGA	1 cut(s)	2271
BspACI	CCGC	7 cut(s)	38, 63, 98, 1952, 3025, 3064, 3067
BspANI	GGCC	7 cut(s)	62, 539, 1024, 1189, 1990, 2151, 2598
BspCNI	CTCAG	6 cut(s)	667, 691, 1306, 1465, 1549, 1975
BspFNI	CGCG	1 cut(s)	2271
BspHI	TCATGA	3 cut(s)	1234, 1549, 3079
BspLI	GGNNCC	7 cut(s)	135, 193, 911, 1189, 1732, 1950, 2404
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	1733
BspOI	GCTAGC	1 cut(s)	1752
BspPI	GGATC	7 cut(s)	110, 506, 1378, 2394, 2397, 2410, 2978
BspT107I	GGYRCC	2 cut(s)	191, 1730
BspTI	CTTAAG	2 cut(s)	164, 1612
BsrGI	TGTACA	2 cut(s)	220, 1479
BsrI	ACTGG	8 cut(s)	178, 1039, 1079, 1252, 1372, 2051, 2657, 2925
BssECI	CCNNGG	6 cut(s)	870, 2208, 2478, 2533, 2562, 2843
BssNAI	GTATAC	1 cut(s)	1771
BssNI	GRCGYC	3 cut(s)	153, 192, 2584
BssT1I	CCWWGG	4 cut(s)	870, 2208, 2533, 2562
Bst1107I	GTATAC	1 cut(s)	1771
Bst2UI	CCWGG	7 cut(s)	356, 536, 599, 761, 907, 2600, 2845
Bst4CI	ACNGT	8 cut(s)	54, 172, 1401, 1513, 1687, 2038, 2413, 2497
Bst6I	CTCTTC	3 cut(s)	1493, 2622, 2736
BstACI	GRCGYC	3 cut(s)	153, 192, 2584
BstAFI	CTTAAG	2 cut(s)	164, 1612
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstAUI	TGTACA	2 cut(s)	220, 1479
BstBAI	YACGTR	2 cut(s)	187, 2045
BstC8I	GCNNGC	2 cut(s)	60, 1750
BstDSI	CCRYGG	2 cut(s)	870, 2208
BstF5I	GGATG	7 cut(s)	506, 769, 955, 1499, 1510, 2422, 2647
BstFNI	CGCG	1 cut(s)	2271
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstMAI	GTCTC	5 cut(s)	310, 665, 1455, 2440, 2911
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 1004, 1739, 2833
BstNI	CCWGG	7 cut(s)	356, 536, 599, 761, 907, 2600, 2845
BstNSI	RCATGY	3 cut(s)	397, 2129, 2353
BstPAI	GACNNNNGTC	1 cut(s)	627
BstSCI	CCNGG	8 cut(s)	108, 354, 534, 597, 759, 905, 2598, 2843
BstSFI	CTRYAG	2 cut(s)	822, 2275
BstSLI	GKGCMC	1 cut(s)	1191
BstUI	CGCG	1 cut(s)	2271
BstV1I	GCAGC	6 cut(s)	15, 425, 805, 808, 1132, 1273
BstX2I	RGATCY	2 cut(s)	1370, 2402
BstXI	CCANNNNNNTGG	2 cut(s)	1671, 2413
BstYI	RGATCY	2 cut(s)	1370, 2402
BstZ17I	GTATAC	1 cut(s)	1771
BsuI	GTATCC	4 cut(s)	1076, 1295, 1699, 2082
BsuRI	GGCC	7 cut(s)	62, 539, 1024, 1189, 1990, 2151, 2598
BtgI	CCRYGG	2 cut(s)	870, 2208
BtgZI	GCGATG	2 cut(s)	38, 443
BtrI	CACGTC	1 cut(s)	956
BtsCI	GGATG	7 cut(s)	506, 769, 955, 1499, 1510, 2422, 2647
BtsI	GCAGTG	1 cut(s)	2202
BtsIMutI	CAGTG	5 cut(s)	1245, 1406, 2202, 2232, 2418
BtuMI	TCGCGA	1 cut(s)	2271
BveI	ACCTGC	1 cut(s)	1733
Cac8I	GCNNGC	2 cut(s)	60, 1750
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	3 cut(s)	1234, 1549, 3079
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	8 cut(s)	175, 352, 867, 1187, 1188, 2048, 2150, 2975
CseI	GACGC	1 cut(s)	2573
CsiI	ACCWGGT	2 cut(s)	354, 905
Csp6I	GTAC	9 cut(s)	76, 181, 221, 970, 1179, 1251, 1480, 1694, 2066
CviQI	GTAC	9 cut(s)	76, 181, 221, 970, 1179, 1251, 1480, 1694, 2066
DinI	GGCGCC	1 cut(s)	193
DraI	TTTAAA	1 cut(s)	1168
DriI	GACNNNNNGTC	1 cut(s)	2528
EaeI	YGGCCR	3 cut(s)	60, 1022, 2596
Eam1104I	CTCTTC	3 cut(s)	1493, 2622, 2736
Eam1105I	GACNNNNNGTC	1 cut(s)	2528
EarI	CTCTTC	3 cut(s)	1493, 2622, 2736
Eco130I	CCWWGG	4 cut(s)	870, 2208, 2533, 2562
Eco147I	AGGCCT	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	1191, 2945
Eco47I	GGWCC	5 cut(s)	175, 352, 867, 2048, 2975
Eco57I	CTGAAG	4 cut(s)	1167, 2533, 2717, 2849
Eco88I	CYCGRG	2 cut(s)	374, 1726
EcoO109I	RGGNCCY	2 cut(s)	352, 1187
EcoRI	GAATTC	4 cut(s)	476, 1518, 1966, 2659
EcoRII	CCWGG	7 cut(s)	354, 534, 597, 759, 905, 2598, 2843
EcoT14I	CCWWGG	4 cut(s)	870, 2208, 2533, 2562
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	2 cut(s)	1191, 2945
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	4 cut(s)	870, 2208, 2533, 2562
FalI	AAGNNNNNCTT	4 cut(s)	1165, 1197, 1622, 1654
FaqI	GGGAC	2 cut(s)	92, 2303
FauI	CCCGC	1 cut(s)	91
FauNDI	CATATG	1 cut(s)	1978
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	3 cut(s)	1405, 1770, 1796
Fnu4HI	GCNGC	8 cut(s)	29, 63, 414, 819, 822, 1146, 1262, 3067
FokI	GGATG	7 cut(s)	513, 776, 962, 1506, 1517, 2429, 2654
FriOI	GRGCYC	2 cut(s)	1191, 2945
Fsp4HI	GCNGC	8 cut(s)	29, 63, 414, 819, 822, 1146, 1262, 3067
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	8 cut(s)	29, 63, 414, 819, 822, 1146, 1262, 3067
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	7 cut(s)	62, 539, 1024, 1189, 1990, 2151, 2598
HapII	CCGG	3 cut(s)	110, 366, 1987
HgaI	GACGC	1 cut(s)	2573
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	3 cut(s)	153, 192, 2584
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	3 cut(s)	430, 943, 1797
HindII	GTYRAC	3 cut(s)	430, 943, 1797
HindIII	AAGCTT	2 cut(s)	1879, 2834
HpaII	CCGG	3 cut(s)	110, 366, 1987
HphI	GGTGA	2 cut(s)	1049, 2604
Hpy99I	CGWCG	5 cut(s)	97, 152, 155, 158, 2589
HpyAV	CCTTC	5 cut(s)	726, 990, 1167, 1730, 2930
HpyCH4III	ACNGT	8 cut(s)	54, 172, 1401, 1513, 1687, 2038, 2413, 2497
HpyCH4IV	ACGT	9 cut(s)	123, 153, 186, 228, 955, 1116, 1266, 2044, 2225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 1004, 1739, 2833
HpySE526I	ACGT	9 cut(s)	123, 153, 186, 228, 955, 1116, 1266, 2044, 2225
Hsp92I	GRCGYC	3 cut(s)	153, 192, 2584
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	439
LmnI	GCTCC	6 cut(s)	368, 551, 1954, 2122, 2737, 3046
Lsp1109I	GCAGC	6 cut(s)	15, 425, 805, 808, 1132, 1273
LweI	GCATC	8 cut(s)	15, 466, 985, 1201, 1228, 1367, 1442, 2424
MabI	ACCWGGT	2 cut(s)	354, 905
MaeII	ACGT	9 cut(s)	123, 153, 186, 228, 955, 1116, 1266, 2044, 2225
MaeIII	GTNAC	7 cut(s)	484, 1037, 1243, 1441, 1575, 2188, 2391
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	2 cut(s)	1370, 2402
MhlI	GDGCHC	3 cut(s)	556, 1191, 2945
MlsI	TGGCCA	2 cut(s)	1024, 2598
MluNI	TGGCCA	2 cut(s)	1024, 2598
Mly113I	GGCGCC	1 cut(s)	192
MmeI	TCCRAC	3 cut(s)	541, 1676, 2767
Mox20I	TGGCCA	2 cut(s)	1024, 2598
Mph1103I	ATGCAT	1 cut(s)	405
MroXI	GAANNNNTTC	3 cut(s)	1896, 2837, 3056
MscI	TGGCCA	2 cut(s)	1024, 2598
MslI	CAYNNNNRTG	5 cut(s)	398, 1236, 2207, 3078, 3081
Msp20I	TGGCCA	2 cut(s)	1024, 2598
MspA1I	CMGCKG	1 cut(s)	1954
MspCI	CTTAAG	2 cut(s)	164, 1612
MspI	CCGG	3 cut(s)	110, 366, 1987
MspR9I	CCNGG	8 cut(s)	110, 356, 536, 599, 761, 907, 2600, 2845
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	2 cut(s)	296, 2519
MvaI	CCWGG	7 cut(s)	356, 536, 599, 761, 907, 2600, 2845
MvnI	CGCG	1 cut(s)	2271
MwoI	GCNNNNNNNGC	4 cut(s)	536, 1004, 1739, 2833
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	2 cut(s)	870, 2208
NdeI	CATATG	1 cut(s)	1978
NheI	GCTAGC	1 cut(s)	1748
NlaIV	GGNNCC	7 cut(s)	135, 193, 911, 1189, 1732, 1950, 2404
NmeAIII	GCCGAG	1 cut(s)	2503
NmuCI	GTSAC	5 cut(s)	484, 1037, 1243, 1575, 2391
NruI	TCGCGA	1 cut(s)	2271
NsiI	ATGCAT	1 cut(s)	405
NspI	RCATGY	3 cut(s)	397, 2129, 2353
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	3 cut(s)	1234, 1549, 3079
PaqCI	CACCTGC	1 cut(s)	1733
PceI	AGGCCT	1 cut(s)	539
PctI	GAATGC	2 cut(s)	296, 2519
PdmI	GAANNNNTTC	3 cut(s)	1896, 2837, 3056
PfeI	GAWTC	9 cut(s)	268, 564, 1016, 1553, 1892, 1957, 2237, 2266, 2690
PflFI	GACNNNGTC	4 cut(s)	152, 239, 356, 1511
PflMI	CCANNNNNTGG	2 cut(s)	497, 1703
PfoI	TCCNGGA	2 cut(s)	108, 759
PkrI	GCNGC	8 cut(s)	30, 64, 415, 820, 823, 1147, 1263, 3068
PluTI	GGCGCC	1 cut(s)	195
Ppu21I	YACGTR	2 cut(s)	187, 2045
PpuMI	RGGWCCY	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	627
PshBI	ATTAAT	3 cut(s)	1065, 2079, 2334
PsiI	TTATAA	2 cut(s)	1920, 2726
Psp1406I	AACGTT	2 cut(s)	123, 2225
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	7 cut(s)	354, 534, 597, 759, 905, 2598, 2843
PspGI	CCWGG	7 cut(s)	354, 534, 597, 759, 905, 2598, 2843
PspN4I	GGNNCC	7 cut(s)	135, 193, 911, 1189, 1732, 1950, 2404
PspOMI	GGGCCC	1 cut(s)	1187
PspPI	GGNCC	8 cut(s)	175, 352, 867, 1187, 1188, 2048, 2150, 2975
PspPPI	RGGWCCY	1 cut(s)	352
PspXI	VCTCGAGB	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	1370, 2402
PsyI	GACNNNGTC	4 cut(s)	152, 239, 356, 1511
RruI	TCGCGA	1 cut(s)	2271
RsaI	GTAC	9 cut(s)	77, 182, 222, 971, 1180, 1252, 1481, 1695, 2067
RsaNI	GTAC	9 cut(s)	76, 181, 221, 970, 1179, 1251, 1480, 1694, 2066
RseI	CAYNNNNRTG	5 cut(s)	398, 1236, 2207, 3078, 3081
SalI	GTCGAC	1 cut(s)	1795
SatI	GCNGC	8 cut(s)	29, 63, 414, 819, 822, 1146, 1262, 3067
Sau96I	GGNCC	8 cut(s)	175, 352, 867, 1187, 1188, 2048, 2150, 2975
ScaI	AGTACT	2 cut(s)	182, 1180
ScrFI	CCNGG	8 cut(s)	110, 356, 536, 599, 761, 907, 2600, 2845
SduI	GDGCHC	3 cut(s)	556, 1191, 2945
SexAI	ACCWGGT	2 cut(s)	354, 905
SfaNI	GCATC	8 cut(s)	15, 466, 985, 1201, 1228, 1367, 1442, 2424
SfcI	CTRYAG	2 cut(s)	822, 2275
SfoI	GGCGCC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	5 cut(s)	175, 352, 867, 2048, 2975
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	5 cut(s)	398, 1236, 2207, 3078, 3081
SmlI	CTYRAG	4 cut(s)	164, 374, 1612, 2464
SmoI	CTYRAG	4 cut(s)	164, 374, 1612, 2464
SpeI	ACTAGT	2 cut(s)	1321, 2995
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	7 cut(s)	38, 63, 98, 1952, 3025, 3064, 3067
SspDI	GGCGCC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	8 cut(s)	108, 354, 534, 597, 759, 905, 2598, 2843
StyI	CCWWGG	4 cut(s)	870, 2208, 2533, 2562
TaaI	ACNGT	8 cut(s)	54, 172, 1401, 1513, 1687, 2038, 2413, 2497
TaiI	ACGT	9 cut(s)	126, 156, 189, 231, 958, 1119, 1269, 2047, 2228
TaqI	TCGA	8 cut(s)	208, 375, 480, 567, 586, 847, 1572, 1796
TaqII	GACCGA	1 cut(s)	2379
TatI	WGTACW	7 cut(s)	75, 180, 220, 969, 1178, 1479, 2065
TauI	GCSGC	2 cut(s)	65, 3069
TfiI	GAWTC	9 cut(s)	268, 564, 1016, 1553, 1892, 1957, 2237, 2266, 2690
TscAI	CASTG	5 cut(s)	1252, 1406, 2209, 2239, 2418
TseFI	GTSAC	5 cut(s)	484, 1037, 1243, 1575, 2391
TseI	GCWGC	6 cut(s)	28, 413, 818, 821, 1145, 1261
Tsp45I	GTSAC	5 cut(s)	484, 1037, 1243, 1575, 2391
TspGWI	ACGGA	5 cut(s)	488, 902, 1211, 1681, 2969
TspRI	CASTG	5 cut(s)	1252, 1406, 2209, 2239, 2418
Tth111I	GACNNNGTC	4 cut(s)	152, 239, 356, 1511
Van91I	CCANNNNNTGG	2 cut(s)	497, 1703
Vha464I	CTTAAG	2 cut(s)	164, 1612
VpaK11BI	GGWCC	5 cut(s)	175, 352, 867, 2048, 2975
VspI	ATTAAT	3 cut(s)	1065, 2079, 2334
XapI	RAATTY	8 cut(s)	476, 1160, 1518, 1966, 2369, 2540, 2659, 2754
XbaI	TCTAGA	1 cut(s)	1591
XceI	RCATGY	3 cut(s)	397, 2129, 2353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	498, 2312
XhoI	CTCGAG	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	2533
XmiI	GTMKAC	3 cut(s)	1405, 1770, 1796
XmnI	GAANNNNTTC	3 cut(s)	1896, 2837, 3056
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	2 cut(s)	182, 1180
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.