Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

61238357 .. 61245233

Gene Structure 6877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGCGCTTGAAGCTTGTTGCTTACGGCTTCTCGTGGGACTAATTGTGTTTCTAAATGTAGAATCCAAGTTCACGGCTTACAATACAACGTCGCAGATTGTCCCCGGAAAGCTTAACGTTCATTTGGTTCCTCACACCCATGACGATGTCGGATGGCGGAAAACCGTTGACCAGTACTACACCGGTGCCAATAATTCCCTCCTGGCGGCTCCCGCTTGTGTTCGAAACGTGTTGGATTCTTTAGTTCCCGCATTGTTGGCCGATAAGAACCGCAAGTTCATATATGCTGAGCAGGCATTTTTTCAACTATGGTGGAGAGAACAGAGGGAGGCGATCCAAGACACAGTCAAGCAGCTAGTCAGCTCTGGCCAACTGGAATTCATAAATGGGGGGATGTGCATGCACGATGAGGCTGCTACGCATTACATTGATATGATTGCTCAGACGACTCTAGGGCATCGATTTATTAAGCAAGAGTTCAATGTGACTCCAAGAGTTGGCTGGCAAATCGATTCGTTTGGACATTCTTCTGTGCAGGCTTACCTTTTGGCGGCTGAGGTTGGCTTTGATTCCCTATTTTTTGGACGAATCGACTACCAAGATATAGCTACGAGGAAAAATGAGAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTCGGTTCATCTGCACAGATTTTTGCTGGTGCATTCCCTAGGCTATATGTTCCTCCTGATAATTTCTACTTTGACACTGATGACGTCTTTGCCCCTTTTGTACAAGATGATATGAATCTTGGTGACTACAATGTGGCAGATCGCGTTAATGATTTTGTATCTGAAGCAATATCACAAGCAAACATTACTCGTACAAATCATATCATGTGGACCATGGGAAAGGATTTCGCGTATCAATATGCTAATTCATGGTTCAGTCAGATGGACAAATTCATTCATCATGTGAATCAAGCTGAGAAGGTTGTTGCAGAATCACTTTCTTGCTTGATAAGTTCAAGATCAAGCACTGGTTGCAAGAGTGTAGTAACAAAGTTTCAACAGTGTCCACTTCTGAATATTAGCTATTGCCCCCCGTCAGAAATTGATCTTTCAAAGGGGAAACACCTGGTTATTGTTGTCTATAACCCTCTGGGATGGAAAAGAGAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAAAGTCACTGTAAAGGACTCCACCGGAAAGGAAATTGAATCACAGATTCTACCGCTGCTTAATGCATCTGTCAGCATAAGAAATGACCATGTTAAGGCATATTTGGGTATAGCACCGAGTGTGACCACAAGTTATTGGCTTGCATTTTCAGCAACTGTACCGCCTCTTGGTTTTAGCACTTACATGGTCTCAAGTGCTGCCACACAGACAGCTACTACTTCAGAGAGACATACAGTGTACAAGACAGAAACAAGTCAAAATGAAACAATAAAAGTTGGGCCTGGAAACTTGAAACTCATTTATTCTGGAAATGATGGAAAACTGATTCAGTACACAAACAGCAGAAGCTCGGTCAAAGAGTCGGTAAAGCAATCATTTAGCTACTACCCTGGAGATGATGGAAGTGTGGTGGATTACGGTGAGGATGGAAATCCGCATTTTCAGGCCTCAGGAGCATATGTCTTCCGTCCTAATGGTACATATCCCATTAAATCCGAAAGGCAGGTTTCTTTGACTATTTTAAGGGGACCATTGTTGGATGAAATACATGAAAGGATCAACTCTTGGATATATCAGGTCACTAGAGTTTACAGGGAAAAAGAGCATGCTGAGATTGAATTTACTATAGGGCCTATACCAGTTGATGATGGTATAGGCAAAGAGATTGTAACTAAGATTACAACCAGCATGAGAACCAACAAACAATTCTACACAGATTCTAACGGGCGCGATTTTATTCAAAGAATTCGAGACTACAGAAAAGACTGGGACCTGGAAGTAAACCAACCTGTCGCAGGAAACTATTATCCGATTAATCTGGGAATCTATACGAAAGATAACAACACAGAGCTGTCAGTATTAGTGGATAGGTCTGTAGGGGGATCCAGCATTGTGGACGGGCAATTGGAACTGATGCTTCATAGGAGGTTGCTTGCAGATGATGACAAAGGTATTGCAGAACAACTAAATGAAATGGTGTGCATTGAACATGATTGCAAAGGACTAACAATTACAGGAAAGTACCACCTGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCATTTCTATTAGCCTTCACAGAACAAACTGGAGATGACTGGACAAACTCTCATGTCACAACCTTTTCGGGAATGGATCCTTCCTACACTCTACCTGATAATGTTGCAATTATAACTCTCCAGGAGCTGGAAGATGGGAAAGTTCTCTTTCGCCTGGCGCATTTATATGAGATTGAAGAGGACAAGCATCTGTCAGTTATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAGAAGATAAAGCATTTAACAGAAATGAGCTTATCTGCTAATCAAGAAAGAAGGGAAATGGAAAGGAAGAGACTGGTTTGGAATGTGCAAGGCTCTTCTGAGGAAGGACCGAAAGGCTTGAGGGGAGGACCTGTTGATCCAACAAAGCTAGTGGTGAATCTTGCTCCAATGGAAATTCGAACATTCACCATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

901

Amino Acids

101.44

Weight (kDa)

5.8

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 320	1.9e-72	Glycosyl hydrolases family 38 N-terminal domain
Laman-like_dom	PF21260	432 - 455	5.7e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	486 - 706	8.3e-43	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	790 - 896	1.9e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2381
AatII	GACGTC	1 cut(s)	747
Acc36I	ACCTGC	1 cut(s)	1669
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	2 cut(s)	497, 2395
AccII	CGCG	3 cut(s)	804, 890, 1905
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	8 cut(s)	328, 1739, 2052, 2065, 2207, 2339, 2352, 2633
AcoI	YGGCCR	2 cut(s)	258, 367
AcsI	RAATTY	5 cut(s)	377, 929, 1793, 1920, 2676
AcuI	CTGAAG	2 cut(s)	843, 1380
AcyI	GRCGYC	2 cut(s)	744, 2239
AdeI	CACNNNGTG	1 cut(s)	1295
AfaI	GTAC	8 cut(s)	176, 762, 853, 1335, 1415, 1508, 1654, 2198
AfiI	CCNNNNNNNGG	7 cut(s)	205, 497, 550, 1270, 1343, 1970, 2395
AflIII	ACRYGT	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	182
AjnI	CCWGG	7 cut(s)	201, 1104, 1456, 1564, 1947, 2388, 2421
AjuI	GAANNNNNNNTTGG	2 cut(s)	1865, 1897
Alw26I	GTCTC	5 cut(s)	665, 1369, 1396, 1920, 2566
AlwI	GGATC	8 cut(s)	328, 1739, 2052, 2065, 2207, 2339, 2352, 2633
AlwNI	CAGNNNCTG	2 cut(s)	1331, 2395
AoxI	GGCC	5 cut(s)	258, 367, 1454, 1620, 1805
ApeKI	GCWGC	4 cut(s)	352, 413, 1231, 1373
ApoI	RAATTY	5 cut(s)	377, 929, 1793, 1920, 2676
AseI	ATTAAT	1 cut(s)	1989
AsiGI	ACCGGT	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	3 cut(s)	7, 1905, 2428
AspS9I	GGNCC	7 cut(s)	870, 1454, 1703, 1805, 1945, 2609, 2630
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	4 cut(s)	794, 1607, 2668, 2680
AsuII	TTCGAA	2 cut(s)	223, 2680
AvaII	GGWCC	5 cut(s)	870, 1703, 1945, 2609, 2630
AvrII	CCTAGG	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	1624
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	2 cut(s)	2057, 2344
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	1630
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	4 cut(s)	364, 400, 1218, 1360
BccI	CCATC	9 cut(s)	147, 916, 1128, 1484, 1568, 1595, 1817, 2396, 2699
BceAI	ACGGC	2 cut(s)	41, 90
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	7 cut(s)	203, 1106, 1458, 1566, 1949, 2390, 2423
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	5 cut(s)	665, 1369, 1396, 1920, 2566
BfaI	CTAG	6 cut(s)	356, 452, 699, 1758, 2651, 2701
BfmI	CTRYAG	3 cut(s)	1800, 1930, 2049
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	1669
BisI	GCNGC	6 cut(s)	207, 353, 414, 552, 1232, 1374
BlnI	CCTAGG	1 cut(s)	698
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	208, 354, 415, 553, 1233, 1375
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	8 cut(s)	105, 203, 1106, 1458, 1566, 1949, 2390, 2423
Bme18I	GGWCC	5 cut(s)	870, 1703, 1945, 2609, 2630
BmgT120I	GGNCC	7 cut(s)	870, 1454, 1703, 1805, 1945, 2609, 2630
BmiI	GGNNCC	7 cut(s)	129, 187, 210, 1704, 1946, 2059, 2346
BmrFI	CCNGG	8 cut(s)	105, 203, 1106, 1458, 1566, 1949, 2390, 2423
BmrI	ACTGGG	1 cut(s)	1951
BmsI	GCATC	4 cut(s)	466, 1250, 2079, 2464
BmuI	ACTGGG	1 cut(s)	1951
BpiI	GAAGAC	1 cut(s)	1630
BpmI	CTGGAG	3 cut(s)	1587, 2319, 2372
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	2 cut(s)	223, 2680
BpuEI	CTTGAG	3 cut(s)	653, 1351, 2641
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	2 cut(s)	460, 510
BsaBI	GATNNNNATC	2 cut(s)	774, 1605
BsaHI	GRCGYC	2 cut(s)	744, 2239
BsaI	GGTCTC	1 cut(s)	1369
BsaJI	CCNNGG	4 cut(s)	103, 698, 873, 1564
BsaWI	WCCGGW	2 cut(s)	182, 1199
BsaXI	ACNNNNNCTCC	4 cut(s)	1620, 1650, 2619, 2649
Bsc4I	CCNNNNNNNGG	7 cut(s)	205, 497, 550, 1270, 1343, 1970, 2395
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	8 cut(s)	172, 378, 1012, 1814, 1946, 2302, 2312, 2580
Bse21I	CCTNAGG	1 cut(s)	1624
Bse8I	GATNNNNATC	2 cut(s)	774, 1605
BseBI	CCWGG	7 cut(s)	203, 1106, 1458, 1566, 1949, 2390, 2423
BseCI	ATCGAT	2 cut(s)	460, 510
BseDI	CCNNGG	4 cut(s)	103, 698, 873, 1564
BseGI	GGATG	6 cut(s)	158, 399, 1139, 1153, 1606, 1720
BseJI	GATNNNNATC	2 cut(s)	774, 1605
BseLI	CCNNNNNNNGG	7 cut(s)	205, 497, 550, 1270, 1343, 1970, 2395
BseMII	CTCAG	8 cut(s)	279, 455, 546, 945, 1638, 1776, 2195, 2592
BseNI	ACTGG	8 cut(s)	172, 378, 1012, 1814, 1946, 2302, 2312, 2580
BseXI	GCAGC	4 cut(s)	364, 400, 1218, 1360
BsgI	GTGCAG	2 cut(s)	554, 657
Bsh1236I	CGCG	3 cut(s)	804, 890, 1905
BshFI	GGCC	5 cut(s)	260, 369, 1456, 1622, 1807
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	460, 510
BsiSI	CCGG	3 cut(s)	105, 183, 1200
BslFI	GGGAC	4 cut(s)	51, 86, 1716, 1958
BslI	CCNNNNNNNGG	7 cut(s)	205, 497, 550, 1270, 1343, 1970, 2395
BsmAI	GTCTC	5 cut(s)	665, 1369, 1396, 1920, 2566
BsmFI	GGGAC	4 cut(s)	51, 86, 1716, 1958
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	5 cut(s)	260, 369, 1456, 1622, 1807
Bso31I	GGTCTC	1 cut(s)	1369
Bsp119I	TTCGAA	2 cut(s)	223, 2680
Bsp1407I	TGTACA	2 cut(s)	760, 1413
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	873
BspANI	GGCC	5 cut(s)	260, 369, 1456, 1622, 1807
BspCNI	CTCAG	8 cut(s)	280, 454, 547, 946, 1637, 1777, 2196, 2593
BspDI	ATCGAT	2 cut(s)	460, 510
BspFNI	CGCG	3 cut(s)	804, 890, 1905
BspLI	GGNNCC	7 cut(s)	129, 187, 210, 1704, 1946, 2059, 2346
BspMI	ACCTGC	1 cut(s)	1669
BspPI	GGATC	8 cut(s)	328, 1739, 2052, 2065, 2207, 2339, 2352, 2633
BspQI	GCTCTTC	1 cut(s)	2602
BspT104I	TTCGAA	2 cut(s)	223, 2680
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	1369
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	2 cut(s)	760, 1413
BsrI	ACTGG	8 cut(s)	172, 378, 1012, 1814, 1946, 2302, 2312, 2580
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	4 cut(s)	103, 698, 873, 1564
BssNI	GRCGYC	2 cut(s)	744, 2239
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	698, 873
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	7 cut(s)	203, 1106, 1458, 1566, 1949, 2390, 2423
Bst4CI	ACNGT	7 cut(s)	166, 346, 1041, 1186, 1333, 1411, 1595
Bst6I	CTCTTC	3 cut(s)	2439, 2564, 2602
BstACI	GRCGYC	2 cut(s)	744, 2239
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstAUI	TGTACA	2 cut(s)	760, 1413
BstBI	TTCGAA	2 cut(s)	223, 2680
BstC8I	GCNNGC	7 cut(s)	294, 401, 503, 537, 1317, 1782, 2109
BstDSI	CCRYGG	1 cut(s)	873
BstENI	CCTNNNNNAGG	1 cut(s)	1968
BstF5I	GGATG	6 cut(s)	158, 399, 1139, 1153, 1606, 1720
BstFNI	CGCG	3 cut(s)	804, 890, 1905
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 1905, 2428
BstMAI	GTCTC	5 cut(s)	665, 1369, 1396, 1920, 2566
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 212, 257, 293, 1011, 1325, 1628
BstNI	CCWGG	7 cut(s)	203, 1106, 1458, 1566, 1949, 2390, 2423
BstNSI	RCATGY	2 cut(s)	403, 1784
BstSCI	CCNGG	8 cut(s)	103, 201, 1104, 1456, 1564, 1947, 2388, 2421
BstSFI	CTRYAG	3 cut(s)	1800, 1930, 2049
BstUI	CGCG	3 cut(s)	804, 890, 1905
BstV1I	GCAGC	4 cut(s)	364, 400, 1218, 1360
BstV2I	GAAGAC	1 cut(s)	1630
BstX2I	RGATCY	2 cut(s)	2057, 2344
BstXI	CCANNNNNNTGG	1 cut(s)	2068
BstYI	RGATCY	2 cut(s)	2057, 2344
Bsu15I	ATCGAT	2 cut(s)	460, 510
Bsu36I	CCTNAGG	1 cut(s)	1624
BsuRI	GGCC	5 cut(s)	260, 369, 1456, 1622, 1807
BsuTUI	ATCGAT	2 cut(s)	460, 510
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	6 cut(s)	158, 399, 1139, 1153, 1606, 1720
BtsIMutI	CAGTG	6 cut(s)	735, 1005, 1046, 1177, 1182, 1416
BveI	ACCTGC	1 cut(s)	1669
Cac8I	GCNNGC	7 cut(s)	294, 401, 503, 537, 1317, 1782, 2109
CaiI	CAGNNNCTG	2 cut(s)	1331, 2395
CfoI	GCGC	3 cut(s)	7, 1905, 2428
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	7 cut(s)	870, 1454, 1703, 1805, 1945, 2609, 2630
ClaI	ATCGAT	2 cut(s)	460, 510
CseI	GACGC	1 cut(s)	2228
CsiI	ACCWGGT	1 cut(s)	1104
Csp6I	GTAC	8 cut(s)	175, 761, 852, 1334, 1414, 1507, 1653, 2197
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	4 cut(s)	293, 328, 2634, 2669
CviQI	GTAC	8 cut(s)	175, 761, 852, 1334, 1414, 1507, 1653, 2197
DraIII	CACNNNGTG	1 cut(s)	1295
EaeI	YGGCCR	2 cut(s)	258, 367
Eam1104I	CTCTTC	3 cut(s)	2439, 2564, 2602
EarI	CTCTTC	3 cut(s)	2439, 2564, 2602
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	698, 873
Eco147I	AGGCCT	1 cut(s)	1622
Eco31I	GGTCTC	1 cut(s)	1369
Eco47I	GGWCC	5 cut(s)	870, 1703, 1945, 2609, 2630
Eco57I	CTGAAG	2 cut(s)	843, 1380
Eco81I	CCTNAGG	1 cut(s)	1624
EcoNI	CCTNNNNNAGG	1 cut(s)	1968
EcoO109I	RGGNCCY	3 cut(s)	1805, 1945, 2630
EcoRI	GAATTC	2 cut(s)	377, 1920
EcoRII	CCWGG	7 cut(s)	201, 1104, 1456, 1564, 1947, 2388, 2421
EcoT14I	CCWWGG	2 cut(s)	698, 873
EcoT22I	ATGCAT	1 cut(s)	1243
ErhI	CCWWGG	2 cut(s)	698, 873
FaqI	GGGAC	4 cut(s)	51, 86, 1716, 1958
FauI	CCCGC	3 cut(s)	220, 256, 639
FauNDI	CATATG	1 cut(s)	1633
Fnu4HI	GCNGC	6 cut(s)	207, 353, 414, 552, 1232, 1374
FokI	GGATG	6 cut(s)	165, 406, 1146, 1160, 1613, 1727
Fsp4HI	GCNGC	6 cut(s)	207, 353, 414, 552, 1232, 1374
FspBI	CTAG	6 cut(s)	356, 452, 699, 1758, 2651, 2701
GlaI	GCGC	3 cut(s)	6, 1904, 2427
GluI	GCNGC	6 cut(s)	207, 353, 414, 552, 1232, 1374
GsuI	CTGGAG	3 cut(s)	1587, 2319, 2372
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	260, 369, 1456, 1622, 1807
HapII	CCGG	3 cut(s)	105, 183, 1200
HgaI	GACGC	1 cut(s)	2228
HhaI	GCGC	3 cut(s)	7, 1905, 2428
Hin1I	GRCGYC	2 cut(s)	744, 2239
Hin6I	GCGC	3 cut(s)	5, 1903, 2426
HinP1I	GCGC	3 cut(s)	5, 1903, 2426
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	12, 110
HpaII	CCGG	3 cut(s)	105, 183, 1200
HphI	GGTGA	4 cut(s)	794, 1607, 2668, 2680
Hpy166II	GTNNAC	9 cut(s)	72, 169, 870, 1046, 1414, 1509, 1765, 1957, 2071
Hpy188III	TCNNGA	8 cut(s)	716, 996, 1482, 1626, 1925, 2255, 2337, 2546
Hpy8I	GTNNAC	9 cut(s)	72, 169, 870, 1046, 1414, 1509, 1765, 1957, 2071
Hpy99I	CGWCG	2 cut(s)	94, 2244
HpyAV	CCTTC	5 cut(s)	952, 2293, 2358, 2547, 2600
HpyCH4III	ACNGT	7 cut(s)	166, 346, 1041, 1186, 1333, 1411, 1595
HpyCH4IV	ACGT	4 cut(s)	89, 117, 228, 744
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 212, 257, 293, 1011, 1325, 1628
HpySE526I	ACGT	4 cut(s)	89, 117, 228, 744
Hsp92I	GRCGYC	2 cut(s)	744, 2239
HspAI	GCGC	3 cut(s)	5, 1903, 2426
LguI	GCTCTTC	1 cut(s)	2602
LmnI	GCTCC	4 cut(s)	214, 1628, 2392, 2671
Lsp1109I	GCAGC	4 cut(s)	364, 400, 1218, 1360
LweI	GCATC	4 cut(s)	466, 1250, 2079, 2464
MabI	ACCWGGT	1 cut(s)	1104
MaeI	CTAG	6 cut(s)	356, 452, 699, 1758, 2651, 2701
MaeII	ACGT	4 cut(s)	89, 117, 228, 744
MaeIII	GTNAC	8 cut(s)	484, 782, 1024, 1180, 1297, 1753, 1843, 2323
MboII	GAAGA	7 cut(s)	519, 1630, 2411, 2456, 2518, 2581, 2589
MfeI	CAATTG	1 cut(s)	2078
MflI	RGATCY	2 cut(s)	2057, 2344
MlsI	TGGCCA	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	5 cut(s)	442, 481, 667, 1187, 1544
MmeI	TCCRAC	4 cut(s)	130, 213, 1692, 2666
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	1243
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	9 cut(s)	114, 468, 807, 1236, 1269, 1665, 1697, 1989, 2519
MslI	CAYNNNNRTG	5 cut(s)	138, 144, 431, 1358, 2433
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	1231
MspI	CCGG	3 cut(s)	105, 183, 1200
MspR9I	CCNGG	8 cut(s)	105, 203, 1106, 1458, 1566, 1949, 2390, 2423
MunI	CAATTG	1 cut(s)	2078
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	7 cut(s)	203, 1106, 1458, 1566, 1949, 2390, 2423
MvnI	CGCG	3 cut(s)	804, 890, 1905
MwoI	GCNNNNNNNGC	7 cut(s)	11, 212, 257, 293, 1011, 1325, 1628
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	1633
NlaIV	GGNNCC	7 cut(s)	129, 187, 210, 1704, 1946, 2059, 2346
NmuCI	GTSAC	6 cut(s)	484, 782, 1180, 1297, 1753, 2323
NsiI	ATGCAT	1 cut(s)	1243
NspI	RCATGY	2 cut(s)	403, 1784
NspV	TTCGAA	2 cut(s)	223, 2680
PaeI	GCATGC	2 cut(s)	403, 1784
PceI	AGGCCT	1 cut(s)	1622
PciSI	GCTCTTC	1 cut(s)	2602
PctI	GAATGC	1 cut(s)	692
PflFI	GACNNNGTC	2 cut(s)	146, 344
PflMI	CCANNNNNTGG	2 cut(s)	497, 2395
PfoI	TCCNGGA	1 cut(s)	2388
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	208, 354, 415, 553, 1233, 1375
PleI	GAGTC	5 cut(s)	442, 481, 666, 1187, 1543
PpsI	GAGTC	5 cut(s)	442, 481, 666, 1187, 1543
PpuMI	RGGWCCY	2 cut(s)	1945, 2630
PshBI	ATTAAT	1 cut(s)	1989
PsiI	TTATAA	1 cut(s)	2381
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	2 cut(s)	1945, 2630
Psp6I	CCWGG	7 cut(s)	201, 1104, 1456, 1564, 1947, 2388, 2421
PspGI	CCWGG	7 cut(s)	201, 1104, 1456, 1564, 1947, 2388, 2421
PspN4I	GGNNCC	7 cut(s)	129, 187, 210, 1704, 1946, 2059, 2346
PspPI	GGNCC	7 cut(s)	870, 1454, 1703, 1805, 1945, 2609, 2630
PspPPI	RGGWCCY	2 cut(s)	1945, 2630
PstNI	CAGNNNCTG	2 cut(s)	1331, 2395
PsuI	RGATCY	2 cut(s)	2057, 2344
PsyI	GACNNNGTC	2 cut(s)	146, 344
RsaI	GTAC	8 cut(s)	176, 762, 853, 1335, 1415, 1508, 1654, 2198
RsaNI	GTAC	8 cut(s)	175, 761, 852, 1334, 1414, 1507, 1653, 2197
RseI	CAYNNNNRTG	5 cut(s)	138, 144, 431, 1358, 2433
SapI	GCTCTTC	1 cut(s)	2602
SaqAI	TTAA	9 cut(s)	114, 468, 807, 1236, 1269, 1665, 1697, 1989, 2519
SatI	GCNGC	6 cut(s)	207, 353, 414, 552, 1232, 1374
Sau96I	GGNCC	7 cut(s)	870, 1454, 1703, 1805, 1945, 2609, 2630
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	5 cut(s)	442, 481, 667, 1187, 1544
ScrFI	CCNGG	8 cut(s)	105, 203, 1106, 1458, 1566, 1949, 2390, 2423
SexAI	ACCWGGT	1 cut(s)	1104
SfaNI	GCATC	4 cut(s)	466, 1250, 2079, 2464
SfcI	CTRYAG	3 cut(s)	1800, 1930, 2049
SfuI	TTCGAA	2 cut(s)	223, 2680
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	5 cut(s)	870, 1703, 1945, 2609, 2630
SmiMI	CAYNNNNRTG	5 cut(s)	138, 144, 431, 1358, 2433
SmlI	CTYRAG	3 cut(s)	632, 1366, 2620
SmoI	CTYRAG	3 cut(s)	632, 1366, 2620
SphI	GCATGC	2 cut(s)	403, 1784
SseBI	AGGCCT	1 cut(s)	1622
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	6 cut(s)	356, 452, 699, 1758, 2651, 2701
StuI	AGGCCT	1 cut(s)	1622
StyD4I	CCNGG	8 cut(s)	103, 201, 1104, 1456, 1564, 1947, 2388, 2421
StyI	CCWWGG	2 cut(s)	698, 873
TaaI	ACNGT	7 cut(s)	166, 346, 1041, 1186, 1333, 1411, 1595
TaiI	ACGT	4 cut(s)	92, 120, 231, 747
TaqI	TCGA	8 cut(s)	223, 460, 510, 591, 1924, 2242, 2680, 2694
TaqII	GACCGA	2 cut(s)	1516, 2626
TatI	WGTACW	4 cut(s)	174, 760, 1413, 1506
TauI	GCSGC	2 cut(s)	209, 554
Tru1I	TTAA	9 cut(s)	114, 468, 807, 1236, 1269, 1665, 1697, 1989, 2519
Tru9I	TTAA	9 cut(s)	114, 468, 807, 1236, 1269, 1665, 1697, 1989, 2519
TscAI	CASTG	6 cut(s)	742, 1012, 1046, 1177, 1189, 1416
TseFI	GTSAC	6 cut(s)	484, 782, 1180, 1297, 1753, 2323
TseI	GCWGC	4 cut(s)	352, 413, 1231, 1373
Tsp45I	GTSAC	6 cut(s)	484, 782, 1180, 1297, 1753, 2323
TspGWI	ACGGA	1 cut(s)	1631
TspRI	CASTG	6 cut(s)	742, 1012, 1046, 1177, 1189, 1416
Tth111I	GACNNNGTC	2 cut(s)	146, 344
Van91I	CCANNNNNTGG	2 cut(s)	497, 2395
VpaK11BI	GGWCC	5 cut(s)	870, 1703, 1945, 2609, 2630
VspI	ATTAAT	1 cut(s)	1989
XagI	CCTNNNNNAGG	1 cut(s)	1968
XapI	RAATTY	5 cut(s)	377, 929, 1793, 1920, 2676
XceI	RCATGY	2 cut(s)	403, 1784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmaJI	CCTAGG	1 cut(s)	698
XspI	CTAG	6 cut(s)	356, 452, 699, 1758, 2651, 2701
ZraI	GACGTC	1 cut(s)	745
ZrmI	AGTACT	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.