Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Forward (+)

8331793 .. 8338647

Gene Structure 6855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCGGTTGAAGCTTGTTGCTTACGGCTTCTCGTGGTACTAATTGTGTTTCTAAATGTAGAATCCAAGTTCATGGCCTACAATACAACGTCGCAGATTGTCCCCGGAAAGCTTAACGTTCATTTAGTTCCTCACACCCATGACGATGTCGGATGGCGGAAAACCGTTGACCAGTACTACACCGGTGCCAATAATTCTCTCCTGGACGCTCCCGCTTGTGTTCGAAACGTGTTGGATTCTTTAGTTCCCGCATTGTTGGCCGATAAGAACCGCAAGTTCATATATGCTGAGCAGGCATTTTTTCAACTATGGTGGAGAGAACAGAGCGAGGTGATCCAAGACACAGTCAAGAAGCTAGTCGGCTCTGGCCAACTGGAATTCATAAATGGGGGGATGTGCATGCAAGATGAGGCTGCTACGCATTACATTGATATGATTGATCAGACGACTCTAGGGCATCGATTTATTAAGCAAGAGTTCAATGTGACTCCAAGAGTTGGCTGGCAAATCGATTCGTTTGGACATTCTTCTGTGCAGGCTTACCTTTTGGCGGCTGAGGTTGGCTTTGATTCCCTATTTTTTGGACGAATCGACTACCAAGATATAGCTACGAGGAAAAATGAGAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTCGGTTCATCTGCACAGATTTTTGCTGGTGCATTCCCTACGCTATATGTTCCTCCTTCTCATAATTTCTACTTTGACACTGATGACGTCCCCCCTCTTGTACAAGATAATATGAATCTTGGTGACTACAATGTGGCAGATCGCATTAATGATTTTGTATCTGAAGCAATATCACAAGCAAACATTACTCGTACAAATCATATCATGTGGACCATGGGAAAGGATTTCGCGTATCAATATGCTAATTCATGGTTCAGTCAGATGGACAAATTCATTCATCATGTGAATCAAGATGGGCGTGTCAATGCCCTATACTCAACCCCATCAATATACACCGATGCCAAACATGCAACAAATGAGTCCTGGCCAATCAAGAGTGATGACTTCTTTCCATATGCTAGTGAAGTGAATGCATACTGGACTGGATATTTTACAAGCAGGCCAGCCCTCAAACGTTATGCTGAGAAGGTTGTTGCAGAATCACTTTCTTGCTTGATAAGTTCAAGATTAAGCACTGGTTGCAAGAGTGTAGTAACAAAGTTTCAACAGTGTCCACTTCTGAATATTAGCTATTGCCCCCCGTCAGAAGTTGATCTTTCAAAGGGAAAACACCTGGTTATTGTTGTCTATAACCCTCTGGGATGGAAAAGAGAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAAAGTCACTGTAAAGGACTCCACCGGAAAGGAAATTGAATCACAGATTCTACCGCTGCTTAATGCATCTGTCAGCATAAGAAATGACCATGTTAAGGCATATTTGGGTATAGCACCGAGTGTGACCACAAGTTATTGGCTTGCATTTTCAGCAACTGTACCACCTCTTGGTTTTAGCACTTACATGGTCTCAAGTGCTGCCACACAGACAGCTACTACTTCAGAGAGACATACAGTGTACAAGACAGAAACAAGTCAAAATGAAACAATAAAAGTTGGGCCTGGAAACTTGAAACTCATTTATTCTGGAAACGATGGAAAACTGATTCAGTACACAAACAGCAGAAGCTCGGTCAAAGAGTCGGTAACACAATCATTTAGCTACTACCCTGGAGATGATGGAAGTGTGGTGGATTACGGTGAGGATGGAAATCCTCATTTTCAGGCCTCAGGAGCATATGTCTTCCGTCCTAATGGTACATATCCCATTAAATCCGAAGGGCAGGTTGCTTTGACTATTTTAAGGGGACCATTGTTGGATGAAATACATGAAAGGATCAACTCTTGGATATATCAGATTAATCTGGGAATCTATACTAAAGATAACAACACAGAGCTGTCAGTATTAGTGGATAGATCTGTAGGGGGATCCAGCATTGTGGACGGGCAATTGGAACTGATGCTTCATAGGAGATTGCTTGCAGATGATGACAAAGGTATTGCAGAACAACTAGATGAAATAGTGTGCATTGAACATGATTGCAAAGGACTAACAATTACAGGAAAGTACCACCTGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCACTTCTATTAGCCTTCACAGAACAAAATGGAGATGACTGGACAAACTCTCATGTCACAACCTTTTCGGGAATGGATCCTTCCTACACTTTACCTGATAATGTTGCAATTATAACTCTCCAGGAGCTGGAAGATGGGAAAGTTCTCTTTCGCCTGGCGCATTTATACGAGATTGGAGAGGACAAGCATCTTTCAGTTATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAGAAGATAAAGCATATAACAGAAATGAGCTTATCTGCTAACCAAGAAAGAAGGGAAATGGAAAGGAAGAGACTGGTTTGGAATGTGCAAGGCTCTTCTGAGGAAGGACCGAAAGGCTTGAGGGGAGGACCTGTTGATCCAACAAAGCTAGTGGTGAATCTTGCTCCAATGGAAATTCGAACATTTACCATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

878

Amino Acids

98.45

Weight (kDa)

5.69

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 353	1.5e-78	Glycosyl hydrolases family 38 N-terminal domain
Laman-like_dom	PF21260	488 - 511	5.5e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	641 - 684	3.7e-08	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	768 - 874	2.2e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2315
AatII	GACGTC	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	1837
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	3 cut(s)	497, 1511, 2329
AccII	CGCG	1 cut(s)	890
AciI	CCGC	8 cut(s)	5, 157, 213, 249, 271, 551, 646, 1397
AclI	AACGTT	2 cut(s)	117, 1114
AclWI	GGATC	8 cut(s)	328, 1907, 1986, 1999, 2141, 2273, 2286, 2567
AcoI	YGGCCR	3 cut(s)	258, 367, 1025
AcsI	RAATTY	3 cut(s)	377, 929, 2610
AcuI	CTGAAG	2 cut(s)	843, 1548
AcyI	GRCGYC	2 cut(s)	747, 2173
AdeI	CACNNNGTG	1 cut(s)	1463
AfaI	GTAC	9 cut(s)	39, 176, 762, 853, 1503, 1583, 1676, 1822, 2132
AfiI	CCNNNNNNNGG	5 cut(s)	497, 550, 1438, 1511, 2329
AflIII	ACRYGT	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	9 cut(s)	11, 305, 481, 1164, 1205, 1260, 1382, 1636, 2096
AjnI	CCWGG	7 cut(s)	201, 1022, 1272, 1624, 1732, 2322, 2355
Alw26I	GTCTC	4 cut(s)	665, 1537, 1564, 2500
AlwI	GGATC	8 cut(s)	328, 1907, 1986, 1999, 2141, 2273, 2286, 2567
AlwNI	CAGNNNCTG	2 cut(s)	1499, 2329
AoxI	GGCC	7 cut(s)	75, 258, 367, 1025, 1100, 1622, 1788
ApeKI	GCWGC	3 cut(s)	413, 1399, 1541
ApoI	RAATTY	3 cut(s)	377, 929, 2610
AseI	ATTAAT	2 cut(s)	807, 1923
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	2362
AspS9I	GGNCC	5 cut(s)	870, 1622, 1871, 2543, 2564
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	4 cut(s)	343, 794, 1775, 2602
AsuII	TTCGAA	2 cut(s)	223, 2614
AvaII	GGWCC	4 cut(s)	870, 1871, 2543, 2564
AxyI	CCTNAGG	1 cut(s)	1792
BalI	TGGCCA	2 cut(s)	369, 1027
BamHI	GGATCC	2 cut(s)	1991, 2278
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	1798
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	400, 1386, 1528
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	7 cut(s)	203, 1024, 1274, 1626, 1734, 2324, 2357
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	4 cut(s)	665, 1537, 1564, 2500
BfaI	CTAG	6 cut(s)	356, 452, 1059, 2075, 2585, 2635
BfmI	CTRYAG	1 cut(s)	1983
BfuAI	ACCTGC	1 cut(s)	1837
BglII	AGATCT	1 cut(s)	1979
BisI	GCNGC	4 cut(s)	414, 552, 1400, 1542
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	4 cut(s)	415, 553, 1401, 1543
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	8 cut(s)	105, 203, 1024, 1274, 1626, 1734, 2324, 2357
Bme18I	GGWCC	4 cut(s)	870, 1871, 2543, 2564
BmgT120I	GGNCC	5 cut(s)	870, 1622, 1871, 2543, 2564
BmiI	GGNNCC	4 cut(s)	187, 1872, 1993, 2280
BmrFI	CCNGG	8 cut(s)	105, 203, 1024, 1274, 1626, 1734, 2324, 2357
BmsI	GCATC	5 cut(s)	466, 988, 1418, 2013, 2398
BpiI	GAAGAC	1 cut(s)	1798
BpmI	CTGGAG	2 cut(s)	1755, 2306
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	2 cut(s)	223, 2614
BpuEI	CTTGAG	3 cut(s)	653, 1519, 2575
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	2 cut(s)	460, 510
BsaBI	GATNNNNATC	1 cut(s)	1773
BsaHI	GRCGYC	2 cut(s)	747, 2173
BsaI	GGTCTC	1 cut(s)	1537
BsaJI	CCNNGG	3 cut(s)	103, 873, 1732
BsaWI	WCCGGW	2 cut(s)	182, 1367
BsaXI	ACNNNNNCTCC	4 cut(s)	1788, 1818, 2553, 2583
Bsc4I	CCNNNNNNNGG	5 cut(s)	497, 550, 1438, 1511, 2329
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	7 cut(s)	172, 378, 1082, 1087, 1180, 2246, 2514
Bse21I	CCTNAGG	1 cut(s)	1792
Bse8I	GATNNNNATC	1 cut(s)	1773
BseBI	CCWGG	7 cut(s)	203, 1024, 1274, 1626, 1734, 2324, 2357
BseCI	ATCGAT	2 cut(s)	460, 510
BseDI	CCNNGG	3 cut(s)	103, 873, 1732
BseGI	GGATG	6 cut(s)	158, 399, 1307, 1321, 1774, 1888
BseJI	GATNNNNATC	1 cut(s)	1773
BseLI	CCNNNNNNNGG	5 cut(s)	497, 550, 1438, 1511, 2329
BseMII	CTCAG	6 cut(s)	279, 546, 1113, 1806, 2129, 2526
BseNI	ACTGG	7 cut(s)	172, 378, 1082, 1087, 1180, 2246, 2514
BseXI	GCAGC	3 cut(s)	400, 1386, 1528
BsgI	GTGCAG	2 cut(s)	554, 657
Bsh1236I	CGCG	1 cut(s)	890
BshFI	GGCC	7 cut(s)	77, 260, 369, 1027, 1102, 1624, 1790
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	460, 510
BsiSI	CCGG	3 cut(s)	105, 183, 1368
BslFI	GGGAC	3 cut(s)	86, 734, 1884
BslI	CCNNNNNNNGG	5 cut(s)	497, 550, 1438, 1511, 2329
BsmAI	GTCTC	4 cut(s)	665, 1537, 1564, 2500
BsmFI	GGGAC	3 cut(s)	86, 734, 1884
BsmI	GAATGC	2 cut(s)	692, 1075
BsnI	GGCC	7 cut(s)	77, 260, 369, 1027, 1102, 1624, 1790
Bso31I	GGTCTC	1 cut(s)	1537
Bsp119I	TTCGAA	2 cut(s)	223, 2614
Bsp1407I	TGTACA	2 cut(s)	760, 1581
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	8 cut(s)	5, 157, 213, 249, 271, 551, 646, 1397
BspANI	GGCC	7 cut(s)	77, 260, 369, 1027, 1102, 1624, 1790
BspCNI	CTCAG	6 cut(s)	280, 547, 1114, 1805, 2130, 2527
BspDI	ATCGAT	2 cut(s)	460, 510
BspFNI	CGCG	1 cut(s)	890
BspLI	GGNNCC	4 cut(s)	187, 1872, 1993, 2280
BspMI	ACCTGC	1 cut(s)	1837
BspPI	GGATC	8 cut(s)	328, 1907, 1986, 1999, 2141, 2273, 2286, 2567
BspQI	GCTCTTC	1 cut(s)	2536
BspT104I	TTCGAA	2 cut(s)	223, 2614
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	1537
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	2 cut(s)	760, 1581
BsrI	ACTGG	7 cut(s)	172, 378, 1082, 1087, 1180, 2246, 2514
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	103, 873, 1732
BssNI	GRCGYC	2 cut(s)	747, 2173
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	7 cut(s)	203, 1024, 1274, 1626, 1734, 2324, 2357
Bst4CI	ACNGT	7 cut(s)	166, 346, 1209, 1354, 1501, 1579, 1763
Bst6I	CTCTTC	2 cut(s)	2498, 2536
BstACI	GRCGYC	2 cut(s)	747, 2173
BstAPI	GCANNNNNTGC	1 cut(s)	1179
BstAUI	TGTACA	2 cut(s)	760, 1581
BstBI	TTCGAA	2 cut(s)	223, 2614
BstC8I	GCNNGC	8 cut(s)	294, 401, 503, 537, 1100, 1104, 1485, 2043
BstDEI	CTNAG	8 cut(s)	288, 555, 654, 1122, 1792, 2138, 2166, 2535
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	6 cut(s)	158, 399, 1307, 1321, 1774, 1888
BstFNI	CGCG	1 cut(s)	890
BstHHI	GCGC	1 cut(s)	2362
BstMAI	GTCTC	4 cut(s)	665, 1537, 1564, 2500
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 257, 293, 1007, 1179, 1493, 1796
BstNI	CCWGG	7 cut(s)	203, 1024, 1274, 1626, 1734, 2324, 2357
BstNSI	RCATGY	2 cut(s)	403, 1010
BstSCI	CCNGG	8 cut(s)	103, 201, 1022, 1272, 1624, 1732, 2322, 2355
BstSFI	CTRYAG	1 cut(s)	1983
BstUI	CGCG	1 cut(s)	890
BstV1I	GCAGC	3 cut(s)	400, 1386, 1528
BstV2I	GAAGAC	1 cut(s)	1798
BstX2I	RGATCY	3 cut(s)	1979, 1991, 2278
BstXI	CCANNNNNNTGG	2 cut(s)	73, 2002
BstYI	RGATCY	3 cut(s)	1979, 1991, 2278
Bsu15I	ATCGAT	2 cut(s)	460, 510
Bsu36I	CCTNAGG	1 cut(s)	1792
BsuRI	GGCC	7 cut(s)	77, 260, 369, 1027, 1102, 1624, 1790
BsuTUI	ATCGAT	2 cut(s)	460, 510
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	6 cut(s)	158, 399, 1307, 1321, 1774, 1888
BtsIMutI	CAGTG	6 cut(s)	738, 1173, 1214, 1345, 1350, 1584
BveI	ACCTGC	1 cut(s)	1837
Cac8I	GCNNGC	8 cut(s)	294, 401, 503, 537, 1100, 1104, 1485, 2043
CaiI	CAGNNNCTG	2 cut(s)	1499, 2329
CfoI	GCGC	1 cut(s)	2362
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	5 cut(s)	870, 1622, 1871, 2543, 2564
ClaI	ATCGAT	2 cut(s)	460, 510
CseI	GACGC	2 cut(s)	215, 2162
CsiI	ACCWGGT	1 cut(s)	1272
Csp6I	GTAC	9 cut(s)	38, 175, 761, 852, 1502, 1582, 1675, 1821, 2131
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	4 cut(s)	293, 328, 2568, 2603
CviQI	GTAC	9 cut(s)	38, 175, 761, 852, 1502, 1582, 1675, 1821, 2131
DdeI	CTNAG	8 cut(s)	288, 555, 654, 1122, 1792, 2138, 2166, 2535
DraIII	CACNNNGTG	1 cut(s)	1463
EaeI	YGGCCR	3 cut(s)	258, 367, 1025
Eam1104I	CTCTTC	2 cut(s)	2498, 2536
EarI	CTCTTC	2 cut(s)	2498, 2536
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	1790
Eco31I	GGTCTC	1 cut(s)	1537
Eco47I	GGWCC	4 cut(s)	870, 1871, 2543, 2564
Eco57I	CTGAAG	2 cut(s)	843, 1548
Eco81I	CCTNAGG	1 cut(s)	1792
EcoO109I	RGGNCCY	1 cut(s)	2564
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	7 cut(s)	201, 1022, 1272, 1624, 1732, 2322, 2355
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	2 cut(s)	1075, 1411
ErhI	CCWWGG	1 cut(s)	873
FalI	AAGNNNNNCTT	2 cut(s)	1239, 1271
FaqI	GGGAC	3 cut(s)	86, 734, 1884
FauI	CCCGC	3 cut(s)	220, 256, 639
FauNDI	CATATG	2 cut(s)	1054, 1801
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	414, 552, 1400, 1542
FokI	GGATG	6 cut(s)	165, 406, 1314, 1328, 1781, 1895
Fsp4HI	GCNGC	4 cut(s)	414, 552, 1400, 1542
FspBI	CTAG	6 cut(s)	356, 452, 1059, 2075, 2585, 2635
GlaI	GCGC	1 cut(s)	2361
GluI	GCNGC	4 cut(s)	414, 552, 1400, 1542
GsuI	CTGGAG	2 cut(s)	1755, 2306
HaeIII	GGCC	7 cut(s)	77, 260, 369, 1027, 1102, 1624, 1790
HapII	CCGG	3 cut(s)	105, 183, 1368
HgaI	GACGC	2 cut(s)	215, 2162
HhaI	GCGC	1 cut(s)	2362
Hin1I	GRCGYC	2 cut(s)	747, 2173
Hin6I	GCGC	1 cut(s)	2360
HinP1I	GCGC	1 cut(s)	2360
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	12, 110
HpaII	CCGG	3 cut(s)	105, 183, 1368
HphI	GGTGA	4 cut(s)	343, 794, 1775, 2602
Hpy166II	GTNNAC	6 cut(s)	169, 870, 1214, 1582, 1677, 2005
Hpy188III	TCNNGA	8 cut(s)	349, 950, 1033, 1164, 1650, 1794, 2189, 2271
Hpy8I	GTNNAC	6 cut(s)	169, 870, 1214, 1582, 1677, 2005
Hpy99I	CGWCG	2 cut(s)	94, 2178
HpyAV	CCTTC	7 cut(s)	726, 1120, 1835, 2227, 2292, 2481, 2534
HpyCH4III	ACNGT	7 cut(s)	166, 346, 1209, 1354, 1501, 1579, 1763
HpyCH4IV	ACGT	5 cut(s)	89, 117, 228, 747, 1114
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 257, 293, 1007, 1179, 1493, 1796
HpyF3I	CTNAG	8 cut(s)	288, 555, 654, 1122, 1792, 2138, 2166, 2535
HpySE526I	ACGT	5 cut(s)	89, 117, 228, 747, 1114
Hsp92I	GRCGYC	2 cut(s)	747, 2173
HspAI	GCGC	1 cut(s)	2360
Ksp22I	TGATCA	1 cut(s)	439
LguI	GCTCTTC	1 cut(s)	2536
LmnI	GCTCC	4 cut(s)	214, 1796, 2326, 2605
Lsp1109I	GCAGC	3 cut(s)	400, 1386, 1528
LweI	GCATC	5 cut(s)	466, 988, 1418, 2013, 2398
MabI	ACCWGGT	1 cut(s)	1272
MaeI	CTAG	6 cut(s)	356, 452, 1059, 2075, 2585, 2635
MaeII	ACGT	5 cut(s)	89, 117, 228, 747, 1114
MaeIII	GTNAC	7 cut(s)	484, 782, 1192, 1348, 1465, 1708, 2257
MboII	GAAGA	6 cut(s)	519, 1798, 2345, 2452, 2515, 2523
MfeI	CAATTG	1 cut(s)	2012
MflI	RGATCY	3 cut(s)	1979, 1991, 2278
MlsI	TGGCCA	2 cut(s)	369, 1027
MluNI	TGGCCA	2 cut(s)	369, 1027
MlyI	GAGTC	6 cut(s)	442, 481, 667, 1028, 1355, 1712
MmeI	TCCRAC	4 cut(s)	130, 213, 1860, 2600
Mox20I	TGGCCA	2 cut(s)	369, 1027
Mph1103I	ATGCAT	2 cut(s)	1075, 1411
MscI	TGGCCA	2 cut(s)	369, 1027
MseI	TTAA	9 cut(s)	114, 468, 807, 1169, 1404, 1437, 1833, 1865, 1923
MslI	CAYNNNNRTG	4 cut(s)	138, 144, 431, 1526
Msp20I	TGGCCA	2 cut(s)	369, 1027
MspA1I	CMGCKG	1 cut(s)	1399
MspI	CCGG	3 cut(s)	105, 183, 1368
MspR9I	CCNGG	8 cut(s)	105, 203, 1024, 1274, 1626, 1734, 2324, 2357
MunI	CAATTG	1 cut(s)	2012
Mva1269I	GAATGC	2 cut(s)	692, 1075
MvaI	CCWGG	7 cut(s)	203, 1024, 1274, 1626, 1734, 2324, 2357
MvnI	CGCG	1 cut(s)	890
MwoI	GCNNNNNNNGC	7 cut(s)	11, 257, 293, 1007, 1179, 1493, 1796
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	2 cut(s)	1054, 1801
NlaIV	GGNNCC	4 cut(s)	187, 1872, 1993, 2280
NmuCI	GTSAC	5 cut(s)	484, 782, 1348, 1465, 2257
NsiI	ATGCAT	2 cut(s)	1075, 1411
NspI	RCATGY	2 cut(s)	403, 1010
NspV	TTCGAA	2 cut(s)	223, 2614
PaeI	GCATGC	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	1790
PciSI	GCTCTTC	1 cut(s)	2536
PctI	GAATGC	2 cut(s)	692, 1075
PflFI	GACNNNGTC	2 cut(s)	146, 344
PflMI	CCANNNNNTGG	3 cut(s)	497, 1511, 2329
PfoI	TCCNGGA	2 cut(s)	201, 2322
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	415, 553, 1401, 1543
PleI	GAGTC	6 cut(s)	442, 481, 666, 1027, 1355, 1711
PpsI	GAGTC	6 cut(s)	442, 481, 666, 1027, 1355, 1711
PpuMI	RGGWCCY	1 cut(s)	2564
PshBI	ATTAAT	2 cut(s)	807, 1923
PsiI	TTATAA	1 cut(s)	2315
Psp1406I	AACGTT	2 cut(s)	117, 1114
Psp5II	RGGWCCY	1 cut(s)	2564
Psp6I	CCWGG	7 cut(s)	201, 1022, 1272, 1624, 1732, 2322, 2355
PspGI	CCWGG	7 cut(s)	201, 1022, 1272, 1624, 1732, 2322, 2355
PspN4I	GGNNCC	4 cut(s)	187, 1872, 1993, 2280
PspPI	GGNCC	5 cut(s)	870, 1622, 1871, 2543, 2564
PspPPI	RGGWCCY	1 cut(s)	2564
PstNI	CAGNNNCTG	2 cut(s)	1499, 2329
PsuI	RGATCY	3 cut(s)	1979, 1991, 2278
PsyI	GACNNNGTC	2 cut(s)	146, 344
RsaI	GTAC	9 cut(s)	39, 176, 762, 853, 1503, 1583, 1676, 1822, 2132
RsaNI	GTAC	9 cut(s)	38, 175, 761, 852, 1502, 1582, 1675, 1821, 2131
RseI	CAYNNNNRTG	4 cut(s)	138, 144, 431, 1526
SapI	GCTCTTC	1 cut(s)	2536
SaqAI	TTAA	9 cut(s)	114, 468, 807, 1169, 1404, 1437, 1833, 1865, 1923
SatI	GCNGC	4 cut(s)	414, 552, 1400, 1542
Sau96I	GGNCC	5 cut(s)	870, 1622, 1871, 2543, 2564
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	6 cut(s)	442, 481, 667, 1028, 1355, 1712
ScrFI	CCNGG	8 cut(s)	105, 203, 1024, 1274, 1626, 1734, 2324, 2357
SexAI	ACCWGGT	1 cut(s)	1272
SfaNI	GCATC	5 cut(s)	466, 988, 1418, 2013, 2398
SfcI	CTRYAG	1 cut(s)	1983
SfuI	TTCGAA	2 cut(s)	223, 2614
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	4 cut(s)	870, 1871, 2543, 2564
SmiMI	CAYNNNNRTG	4 cut(s)	138, 144, 431, 1526
SmlI	CTYRAG	3 cut(s)	632, 1534, 2554
SmoI	CTYRAG	3 cut(s)	632, 1534, 2554
SphI	GCATGC	1 cut(s)	403
SseBI	AGGCCT	1 cut(s)	1790
SsiI	CCGC	8 cut(s)	5, 157, 213, 249, 271, 551, 646, 1397
SspI	AATATT	1 cut(s)	1225
SspMI	CTAG	6 cut(s)	356, 452, 1059, 2075, 2585, 2635
StuI	AGGCCT	1 cut(s)	1790
StyD4I	CCNGG	8 cut(s)	103, 201, 1022, 1272, 1624, 1732, 2322, 2355
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	7 cut(s)	166, 346, 1209, 1354, 1501, 1579, 1763
TaiI	ACGT	5 cut(s)	92, 120, 231, 750, 1117
TaqI	TCGA	7 cut(s)	223, 460, 510, 591, 2176, 2614, 2628
TaqII	GACCGA	2 cut(s)	1684, 2560
TatI	WGTACW	4 cut(s)	174, 760, 1581, 1674
TauI	GCSGC	1 cut(s)	554
Tru1I	TTAA	9 cut(s)	114, 468, 807, 1169, 1404, 1437, 1833, 1865, 1923
Tru9I	TTAA	9 cut(s)	114, 468, 807, 1169, 1404, 1437, 1833, 1865, 1923
TscAI	CASTG	6 cut(s)	745, 1180, 1214, 1345, 1357, 1584
TseFI	GTSAC	5 cut(s)	484, 782, 1348, 1465, 2257
TseI	GCWGC	3 cut(s)	413, 1399, 1541
Tsp45I	GTSAC	5 cut(s)	484, 782, 1348, 1465, 2257
TspGWI	ACGGA	1 cut(s)	1799
TspRI	CASTG	6 cut(s)	745, 1180, 1214, 1345, 1357, 1584
Tth111I	GACNNNGTC	2 cut(s)	146, 344
Van91I	CCANNNNNTGG	3 cut(s)	497, 1511, 2329
VpaK11BI	GGWCC	4 cut(s)	870, 1871, 2543, 2564
VspI	ATTAAT	2 cut(s)	807, 1923
XapI	RAATTY	3 cut(s)	377, 929, 2610
XceI	RCATGY	2 cut(s)	403, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XspI	CTAG	6 cut(s)	356, 452, 1059, 2075, 2585, 2635
ZraI	GACGTC	1 cut(s)	748
ZrmI	AGTACT	1 cut(s)	176
Zsp2I	ATGCAT	2 cut(s)	1075, 1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.